Journal Article

Experimental Clarification of PRPS-1 Structural Essentials

Chailyan, Samvel G, Grabski, Hovakim V, Ginosyan, Siranuysh V, Danielyan, Kristine E, Tiratsuyan, Susanna G

2022

Overview

Phosphoribosyl pyrophosphate synthetase-1 (PRPS-1; EC 2.7.6.1.) catalyzes the binding of phosphate-group to ribose 5-phosphate, forming the 5-phosphoribosyl-1-pyrophosphate, which is necessary for the salvage pathways of purine and pyrimidine, pyridine nucleotide cofactors - NAD and NADP, the amino acids histidine and tryptophan biosynthesis. We aimed to investigate the impact of the different effectors on the activity of PRPS-1, to check the activity of the enzyme in vitro in a wide range of pHs and investigate some structural essentials of the enzyme, isolated from brain and liver. Molecular docking analyses were used to delineate the essentials of PRPS-1 structure, to find out the existence of enzyme effectors. Previously created by us kit was used for determination of the activity of PRPS-1 based on the formation of the inorganic phosphates (λ = 700 nm, Cary 60, Agilent, USA). Effectors impact on the activity of PRPS-1 was evaluated. In silico results of the effectors were later proven by in vitro experiments. For the first time biochemical essentials, including the existence of the multiple pockets, involvement of the amino acids into the processes of interactions with the effectors, evolutional of the sequence conservation, tissue depended Vmax differences were identified.

• Publisher: Springer Nature B.V
• Subject: Amino acids / Antibiotics / Biosynthesis / Cofactors / Conserved sequence / Effectors / Enzymes / Histidine / Molecular docking / Nucleotides / Phosphates / Phosphoribosyl pyrophosphate / Ribose / Tryptophan