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Genetic Dissection and Identification of Candidate Genes for Salinity Tolerance Using Axiom®CicerSNP Array in Chickpea
by
Roorkiwal, Manish
, Kumar, Neeraj
, Madugula, Praveen
, Varshney, Rajeev K
, PS, Shanmugavadivel
, Singh, Sarvjeet
, Soren, Khela Ram
, Sengar, Meenu Singh
, Bharadwaj, Chellapilla
, P.R., Sneha Priya
, Sagurthi, Someswar Rao
, Siddique, Kadambot H.M.
, Bhandari, Aditi
, Pal, Madan
, Sharma, Parbodh Chander
, Singh, Narendra Pratap
, Mann, Anita
, Singh, Jogendra
, Barmukh, Rutwik
, Sanwal, Satish Kumar
in
Abiotic stress
/ Agricultural production
/ Cereals
/ Chromosome Mapping
/ Cicer - genetics
/ Cicer - physiology
/ Flowers & plants
/ Food security
/ Genes, Plant
/ Legumes
/ Multigene Family
/ Polymorphism, Single Nucleotide
/ Population
/ Productivity
/ Quantitative Trait Loci
/ Salinity
/ Salt
/ Salt Tolerance
/ Seeds
2020
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Genetic Dissection and Identification of Candidate Genes for Salinity Tolerance Using Axiom®CicerSNP Array in Chickpea
by
Roorkiwal, Manish
, Kumar, Neeraj
, Madugula, Praveen
, Varshney, Rajeev K
, PS, Shanmugavadivel
, Singh, Sarvjeet
, Soren, Khela Ram
, Sengar, Meenu Singh
, Bharadwaj, Chellapilla
, P.R., Sneha Priya
, Sagurthi, Someswar Rao
, Siddique, Kadambot H.M.
, Bhandari, Aditi
, Pal, Madan
, Sharma, Parbodh Chander
, Singh, Narendra Pratap
, Mann, Anita
, Singh, Jogendra
, Barmukh, Rutwik
, Sanwal, Satish Kumar
in
Abiotic stress
/ Agricultural production
/ Cereals
/ Chromosome Mapping
/ Cicer - genetics
/ Cicer - physiology
/ Flowers & plants
/ Food security
/ Genes, Plant
/ Legumes
/ Multigene Family
/ Polymorphism, Single Nucleotide
/ Population
/ Productivity
/ Quantitative Trait Loci
/ Salinity
/ Salt
/ Salt Tolerance
/ Seeds
2020
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Genetic Dissection and Identification of Candidate Genes for Salinity Tolerance Using Axiom®CicerSNP Array in Chickpea
by
Roorkiwal, Manish
, Kumar, Neeraj
, Madugula, Praveen
, Varshney, Rajeev K
, PS, Shanmugavadivel
, Singh, Sarvjeet
, Soren, Khela Ram
, Sengar, Meenu Singh
, Bharadwaj, Chellapilla
, P.R., Sneha Priya
, Sagurthi, Someswar Rao
, Siddique, Kadambot H.M.
, Bhandari, Aditi
, Pal, Madan
, Sharma, Parbodh Chander
, Singh, Narendra Pratap
, Mann, Anita
, Singh, Jogendra
, Barmukh, Rutwik
, Sanwal, Satish Kumar
in
Abiotic stress
/ Agricultural production
/ Cereals
/ Chromosome Mapping
/ Cicer - genetics
/ Cicer - physiology
/ Flowers & plants
/ Food security
/ Genes, Plant
/ Legumes
/ Multigene Family
/ Polymorphism, Single Nucleotide
/ Population
/ Productivity
/ Quantitative Trait Loci
/ Salinity
/ Salt
/ Salt Tolerance
/ Seeds
2020
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Genetic Dissection and Identification of Candidate Genes for Salinity Tolerance Using Axiom®CicerSNP Array in Chickpea
Journal Article
Genetic Dissection and Identification of Candidate Genes for Salinity Tolerance Using Axiom®CicerSNP Array in Chickpea
2020
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Overview
Globally, chickpea production is severely affected by salinity stress. Understanding the genetic basis for salinity tolerance is important to develop salinity tolerant chickpeas. A recombinant inbred line (RIL) population developed using parental lines ICCV 10 (salt-tolerant) and DCP 92-3 (salt-sensitive) was screened under field conditions to collect information on agronomy, yield components, and stress tolerance indices. Genotyping data generated using Axiom®CicerSNP array was used to construct a linkage map comprising 1856 SNP markers spanning a distance of 1106.3 cM across eight chickpea chromosomes. Extensive analysis of the phenotyping and genotyping data identified 28 quantitative trait loci (QTLs) explaining up to 28.40% of the phenotypic variance in the population. We identified QTL clusters on CaLG03 and CaLG06, each harboring major QTLs for yield and yield component traits under salinity stress. The main-effect QTLs identified in these two clusters were associated with key genes such as calcium-dependent protein kinases, histidine kinases, cation proton antiporter, and WRKY and MYB transcription factors, which are known to impart salinity stress tolerance in crop plants. Molecular markers/genes associated with these major QTLs, after validation, will be useful to undertake marker-assisted breeding for developing better varieties with salinity tolerance.
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