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Development of nuclear, chloroplast and mitochondrial SNP markers for Khaya sp

by Thünen Institute of Forest Genetics , Kersten, Birgit , Degen, Bernd , Paulini, Maike , Bouda, Z. Henri-Noël , Ekué, Marius , Pakull, Birte , Mader, Malte , Bouka Dipelet, Ulrich

in Africa / Animal Genetics and Genomics / Biodiversity / Biomedical and Life Sciences / Chloroplasts / Conservation Biology/Ecology / DNA sequencing / Ecology / Evolutionary Biology / Genetics / Genomes / genotype / Genotypes / Genotyping / Khaya / Life Sciences / Mitochondria / Plant Genetics and Genomics / Populations and Evolution / sequence analysis / Single-nucleotide polymorphism / Technical Note

2016

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Development of nuclear, chloroplast and mitochondrial SNP markers for Khaya sp

by Thünen Institute of Forest Genetics , Kersten, Birgit , Degen, Bernd , Paulini, Maike , Bouda, Z. Henri-Noël , Ekué, Marius , Pakull, Birte , Mader, Malte , Bouka Dipelet, Ulrich

2016

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Development of nuclear, chloroplast and mitochondrial SNP markers for Khaya sp

by Thünen Institute of Forest Genetics , Kersten, Birgit , Degen, Bernd , Paulini, Maike , Bouda, Z. Henri-Noël , Ekué, Marius , Pakull, Birte , Mader, Malte , Bouka Dipelet, Ulrich

2016

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Journal Article

Development of nuclear, chloroplast and mitochondrial SNP markers for Khaya sp

Thünen Institute of Forest Genetics,

Kersten, Birgit,

Degen, Bernd,

Paulini, Maike,

Bouda, Z. Henri-Noël,

Ekué, Marius,

Pakull, Birte,

Mader, Malte,

Bouka Dipelet, Ulrich

2016

Overview

100 SNP and one Indel markers were developed for Khaya using a combination of restriction associated DNA sequencing and low coverage MiSeq genome sequencing. The marker set was successfully used to genotype a set of 1919 individuals, representing 5 Khaya species from 18 African countries, using MassARRAY ® iPLEX™ genotyping.

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Publisher

Springer,HAL CCSD,Springer Netherlands,Springer Nature B.V

Subject

Africa

/ Animal Genetics and Genomics

/ Biodiversity

/ Biomedical and Life Sciences

/ Chloroplasts

/ Conservation Biology/Ecology

/ DNA sequencing