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Intron Retention as a Homeostatic State Variable for Drug Response and Recovery: Lessons from Depression for Broader Applications
by
Okada, Norihiro
, Nishi, Akinori
, Maruko, Akiko
, Oshima, Kenshiro
, Kobayashi, Yoshinori
in
Adaptation
/ Biomarkers
/ Depression - drug therapy
/ Depression - genetics
/ Depression, Mental
/ Gene expression
/ Genes
/ Homeostasis - genetics
/ Humans
/ Introns - genetics
/ Ketamine - therapeutic use
/ Mental depression
/ Pharmacodynamics
/ Physiology
/ Retention
/ Review
/ Trends
2026
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Intron Retention as a Homeostatic State Variable for Drug Response and Recovery: Lessons from Depression for Broader Applications
by
Okada, Norihiro
, Nishi, Akinori
, Maruko, Akiko
, Oshima, Kenshiro
, Kobayashi, Yoshinori
in
Adaptation
/ Biomarkers
/ Depression - drug therapy
/ Depression - genetics
/ Depression, Mental
/ Gene expression
/ Genes
/ Homeostasis - genetics
/ Humans
/ Introns - genetics
/ Ketamine - therapeutic use
/ Mental depression
/ Pharmacodynamics
/ Physiology
/ Retention
/ Review
/ Trends
2026
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Intron Retention as a Homeostatic State Variable for Drug Response and Recovery: Lessons from Depression for Broader Applications
by
Okada, Norihiro
, Nishi, Akinori
, Maruko, Akiko
, Oshima, Kenshiro
, Kobayashi, Yoshinori
in
Adaptation
/ Biomarkers
/ Depression - drug therapy
/ Depression - genetics
/ Depression, Mental
/ Gene expression
/ Genes
/ Homeostasis - genetics
/ Humans
/ Introns - genetics
/ Ketamine - therapeutic use
/ Mental depression
/ Pharmacodynamics
/ Physiology
/ Retention
/ Review
/ Trends
2026
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Intron Retention as a Homeostatic State Variable for Drug Response and Recovery: Lessons from Depression for Broader Applications
Journal Article
Intron Retention as a Homeostatic State Variable for Drug Response and Recovery: Lessons from Depression for Broader Applications
2026
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Overview
Clinically robust molecular biomarkers for depression have remained elusive, despite extensive transcriptomic research. This gap is consequential: depression is prevalent and heterogeneous, yet objective measures to quantify burden, stratify patients, and track recovery remain limited. Here, we review evidence that intron retention (IR) can serve as a homeostatic state variable—and therefore a sensitive biomarker—reporting stress adaptation and recovery at an upstream regulatory layer, often preceding or outperforming differential gene expression (DEG) readouts. Mechanistically, IR enables bidirectional fine-tuning of effective gene output: increased IR (IncIR) can throttle output under overload, whereas decreased IR (DecIR) releases this brake to restore gene output. Because these shifts are reversible and treatment-responsive, IR signatures can function not only as disease markers but also as pharmacodynamic metrics for blood-based monitoring of drug response and recovery. To evaluate the clinical utility of IR, we use depression as a proof of concept and focus on two interventions: (i) the Kampo formula hangekobokuto (HKT), which is associated with IR normalization consistent with reduced peripheral inflammatory load; and (ii) ketamine, where IR patterns measured before ketamine treatment in non-responders are linked to stronger innate-immune/antiviral activity, suggesting a higher inflammatory load that may limit treatment benefit. Finally, we discuss transdiagnostic extensions beyond depression, using early cognitive decline (mild cognitive impairment, MCI) as a stringent, biologically distal test case for blood-based IR/DI readouts and motivating independent cohort replication and longitudinal validation.
Publisher
MDPI AG,Multidisciplinary Digital Publishing Institute (MDPI)
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