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A bird’s-eye view of Italian genomic variation through whole-genome sequencing
by
Matullo Giuseppe
, Robino Antonietta
, Brumat Marco
, Trudu Matteo
, Toniolo, Daniela
, Gasparini, Paolo
, Girotto Giorgia
, Barbieri Caterina
, Gandin Ilaria
, Concas Maria Pina
, Polasek Ozren
, Cocca Massimiliano
, Kolčić Ivana
, Sala, Cinzia Felicita
, Mezzavilla Massimo
, Vuckovic Dragana
, Soranzo, Nicole
in
Genetic diversity
/ Genomes
/ Natural selection
/ Population structure
/ Whole genome sequencing
2020
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A bird’s-eye view of Italian genomic variation through whole-genome sequencing
by
Matullo Giuseppe
, Robino Antonietta
, Brumat Marco
, Trudu Matteo
, Toniolo, Daniela
, Gasparini, Paolo
, Girotto Giorgia
, Barbieri Caterina
, Gandin Ilaria
, Concas Maria Pina
, Polasek Ozren
, Cocca Massimiliano
, Kolčić Ivana
, Sala, Cinzia Felicita
, Mezzavilla Massimo
, Vuckovic Dragana
, Soranzo, Nicole
in
Genetic diversity
/ Genomes
/ Natural selection
/ Population structure
/ Whole genome sequencing
2020
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While trying to remove the title from your shelf something went wrong :( Kindly try again later!
Do you wish to request the book?
A bird’s-eye view of Italian genomic variation through whole-genome sequencing
by
Matullo Giuseppe
, Robino Antonietta
, Brumat Marco
, Trudu Matteo
, Toniolo, Daniela
, Gasparini, Paolo
, Girotto Giorgia
, Barbieri Caterina
, Gandin Ilaria
, Concas Maria Pina
, Polasek Ozren
, Cocca Massimiliano
, Kolčić Ivana
, Sala, Cinzia Felicita
, Mezzavilla Massimo
, Vuckovic Dragana
, Soranzo, Nicole
in
Genetic diversity
/ Genomes
/ Natural selection
/ Population structure
/ Whole genome sequencing
2020
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A bird’s-eye view of Italian genomic variation through whole-genome sequencing
Journal Article
A bird’s-eye view of Italian genomic variation through whole-genome sequencing
2020
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Overview
The genomic variation of the Italian peninsula populations is currently under characterised: the only Italian whole-genome reference is represented by the Tuscans from the 1000 Genome Project. To address this issue, we sequenced a total of 947 Italian samples from three different geographical areas. First, we defined a new Italian Genome Reference Panel (IGRP1.0) for imputation, which improved imputation accuracy, especially for rare variants, and we tested it by GWAS analysis on red blood traits. Furthermore, we extended the catalogue of genetic variation investigating the level of population structure, the pattern of natural selection, the distribution of deleterious variants and occurrence of human knockouts (HKOs). Overall the results demonstrate a high level of genomic differentiation between cohorts, different signatures of natural selection and a distinctive distribution of deleterious variants and HKOs, confirming the necessity of distinct genome references for the Italian population.
Publisher
Nature Publishing Group
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