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Discovery of a novel Parvovirinae virus, porcine parvovirus 7, by metagenomic sequencing of porcine rectal swabs
by
Hause, Ben M.
, Palinski, Rachel M.
, Mitra, Namita
in
adults
/ amino acids
/ Animals
/ Biomedical and Life Sciences
/ Biomedicine
/ Chiroptera
/ Genome, Viral - genetics
/ Medical Microbiology
/ metagenomics
/ Metagenomics - methods
/ open reading frames
/ Parvoviridae Infections - virology
/ Parvovirus, Porcine - genetics
/ Phylogeny
/ Plant Sciences
/ proteins
/ quantitative polymerase chain reaction
/ screening
/ Sequence Analysis, DNA - methods
/ swine
/ Swine - virology
/ Swine Diseases - virology
/ Ungulate protoparvovirus 1
/ United States
/ Virology
/ viruses
2016
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Discovery of a novel Parvovirinae virus, porcine parvovirus 7, by metagenomic sequencing of porcine rectal swabs
by
Hause, Ben M.
, Palinski, Rachel M.
, Mitra, Namita
in
adults
/ amino acids
/ Animals
/ Biomedical and Life Sciences
/ Biomedicine
/ Chiroptera
/ Genome, Viral - genetics
/ Medical Microbiology
/ metagenomics
/ Metagenomics - methods
/ open reading frames
/ Parvoviridae Infections - virology
/ Parvovirus, Porcine - genetics
/ Phylogeny
/ Plant Sciences
/ proteins
/ quantitative polymerase chain reaction
/ screening
/ Sequence Analysis, DNA - methods
/ swine
/ Swine - virology
/ Swine Diseases - virology
/ Ungulate protoparvovirus 1
/ United States
/ Virology
/ viruses
2016
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Discovery of a novel Parvovirinae virus, porcine parvovirus 7, by metagenomic sequencing of porcine rectal swabs
by
Hause, Ben M.
, Palinski, Rachel M.
, Mitra, Namita
in
adults
/ amino acids
/ Animals
/ Biomedical and Life Sciences
/ Biomedicine
/ Chiroptera
/ Genome, Viral - genetics
/ Medical Microbiology
/ metagenomics
/ Metagenomics - methods
/ open reading frames
/ Parvoviridae Infections - virology
/ Parvovirus, Porcine - genetics
/ Phylogeny
/ Plant Sciences
/ proteins
/ quantitative polymerase chain reaction
/ screening
/ Sequence Analysis, DNA - methods
/ swine
/ Swine - virology
/ Swine Diseases - virology
/ Ungulate protoparvovirus 1
/ United States
/ Virology
/ viruses
2016
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Discovery of a novel Parvovirinae virus, porcine parvovirus 7, by metagenomic sequencing of porcine rectal swabs
Journal Article
Discovery of a novel Parvovirinae virus, porcine parvovirus 7, by metagenomic sequencing of porcine rectal swabs
2016
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Overview
Parvoviruses are a diverse group of viruses containing some of the smallest known species that are capable of infecting a wide range of animals. Metagenomic sequencing of pooled rectal swabs from adult pigs identified a 4103-bp contig consisting of two major open reading frames encoding proteins of 672 and 469 amino acids (aa) in length. BLASTP analysis of the 672-aa protein found 42.4 % identity to fruit bat (
Eidolon helvum
) parvovirus 2 (EhPV2) and 37.9 % to turkey parvovirus (TuPV) TP1-2012/HUN NS1 proteins. The 469-aa protein had no significant similarity to known proteins. Genetic and phylogenetic analyses suggest that PPV7, EhPV2, and TuPV represent a novel genus in the family
Parvoviridae
. Quantitative PCR screening of 182 porcine diagnostic samples found a total of 16 positives (8.6 %). Together, these data suggest that PPV7 is a highly divergent novel parvovirus prevalent within the US swine.
Publisher
Springer US,Springer Nature B.V
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