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Insight into the evolution of the Solanaceae from the parental genomes of Petunia hybrida
by
Reproduction et développement des plantes (RDP) ; École normale supérieure de Lyon (ENS de Lyon) ; Université de Lyon-Université de Lyon-Institut National de la Recherche Agronomique (INRA)-Université Claude Bernard Lyon 1 (UCBL) ; Université de Lyon-Centre National de la Recherche Scientifique (CNRS)
, Egea-Cortines, Marcos
, Institute of Plant Science
, Boersma, Maaike
, Richert-Pöggeler, Katja
, Consiglio per la Ricerca in Agricoltura e l’analisi dell’economia agraria = Council for Agricultural Research and Economics (CREA)
, Bucher, Marcel
, Kuhlemeier, Cris
, Bao, Manzhu
, Radboud University [Nijmegen]
, Barry, Cornelius
, Fernandez-Pozo, Noe
, Nouri, Eva
, Universität zu Köln = University of Cologne
, Zethof, Jan
, Franken, Philipp
, University of Leicester
, Sims, Thomas
, Vijverberg, Kitty
, Wageningen University and Research [Wageningen] (WUR)
, Weiss, Julia
, Malla, Diwa
, Warner, Ryan
, Davies, Kevin
, Schranz, Eric
, Vandenbussche, Michiel
, Bapaume, Laure
, Bombarely, Aureliano
, Cornell University [New York]
, Villarino, Gonzalo
, Moser, Michel
, Qi, Qinzhou
, Marti
in
45
/ 631/181
/ 631/208
/ 631/449
/ 631/449/2669
/ Bedding
/ Biological evolution
/ Biomedical and Life Sciences
/ Botanics
/ Butterflies & moths
/ Circadian rhythms
/ Diploids
/ Evolution, Molecular
/ Gene sequencing
/ Genome, Plant
/ Genomes
/ Hybridization, Genetic
/ Inbreeding
/ Incompatibility
/ Life Sciences
/ Petunia
/ Petunia - genetics
/ Petunia hybrida
/ Plant reproduction
/ Plant Sciences
/ Pollination
/ Polyploidy
/ Self-incompatibility
/ Solanaceae
/ Symbiosis
/ Tomatoes
/ Transcription factors
/ Vegetal Biology
/ Whole genome sequencing
2016
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Insight into the evolution of the Solanaceae from the parental genomes of Petunia hybrida
by
Reproduction et développement des plantes (RDP) ; École normale supérieure de Lyon (ENS de Lyon) ; Université de Lyon-Université de Lyon-Institut National de la Recherche Agronomique (INRA)-Université Claude Bernard Lyon 1 (UCBL) ; Université de Lyon-Centre National de la Recherche Scientifique (CNRS)
, Egea-Cortines, Marcos
, Institute of Plant Science
, Boersma, Maaike
, Richert-Pöggeler, Katja
, Consiglio per la Ricerca in Agricoltura e l’analisi dell’economia agraria = Council for Agricultural Research and Economics (CREA)
, Bucher, Marcel
, Kuhlemeier, Cris
, Bao, Manzhu
, Radboud University [Nijmegen]
, Barry, Cornelius
, Fernandez-Pozo, Noe
, Nouri, Eva
, Universität zu Köln = University of Cologne
, Zethof, Jan
, Franken, Philipp
, University of Leicester
, Sims, Thomas
, Vijverberg, Kitty
, Wageningen University and Research [Wageningen] (WUR)
, Weiss, Julia
, Malla, Diwa
, Warner, Ryan
, Davies, Kevin
, Schranz, Eric
, Vandenbussche, Michiel
, Bapaume, Laure
, Bombarely, Aureliano
, Cornell University [New York]
, Villarino, Gonzalo
, Moser, Michel
, Qi, Qinzhou
, Marti
in
45
/ 631/181
/ 631/208
/ 631/449
/ 631/449/2669
/ Bedding
/ Biological evolution
/ Biomedical and Life Sciences
/ Botanics
/ Butterflies & moths
/ Circadian rhythms
/ Diploids
/ Evolution, Molecular
/ Gene sequencing
/ Genome, Plant
/ Genomes
/ Hybridization, Genetic
/ Inbreeding
/ Incompatibility
/ Life Sciences
/ Petunia
/ Petunia - genetics
/ Petunia hybrida
/ Plant reproduction
/ Plant Sciences
/ Pollination
/ Polyploidy
/ Self-incompatibility
/ Solanaceae
/ Symbiosis
/ Tomatoes
/ Transcription factors
/ Vegetal Biology
/ Whole genome sequencing
2016
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Insight into the evolution of the Solanaceae from the parental genomes of Petunia hybrida
by
Reproduction et développement des plantes (RDP) ; École normale supérieure de Lyon (ENS de Lyon) ; Université de Lyon-Université de Lyon-Institut National de la Recherche Agronomique (INRA)-Université Claude Bernard Lyon 1 (UCBL) ; Université de Lyon-Centre National de la Recherche Scientifique (CNRS)
, Egea-Cortines, Marcos
, Institute of Plant Science
, Boersma, Maaike
, Richert-Pöggeler, Katja
, Consiglio per la Ricerca in Agricoltura e l’analisi dell’economia agraria = Council for Agricultural Research and Economics (CREA)
, Bucher, Marcel
, Kuhlemeier, Cris
, Bao, Manzhu
, Radboud University [Nijmegen]
, Barry, Cornelius
, Fernandez-Pozo, Noe
, Nouri, Eva
, Universität zu Köln = University of Cologne
, Zethof, Jan
, Franken, Philipp
, University of Leicester
, Sims, Thomas
, Vijverberg, Kitty
, Wageningen University and Research [Wageningen] (WUR)
, Weiss, Julia
, Malla, Diwa
, Warner, Ryan
, Davies, Kevin
, Schranz, Eric
, Vandenbussche, Michiel
, Bapaume, Laure
, Bombarely, Aureliano
, Cornell University [New York]
, Villarino, Gonzalo
, Moser, Michel
, Qi, Qinzhou
, Marti
in
45
/ 631/181
/ 631/208
/ 631/449
/ 631/449/2669
/ Bedding
/ Biological evolution
/ Biomedical and Life Sciences
/ Botanics
/ Butterflies & moths
/ Circadian rhythms
/ Diploids
/ Evolution, Molecular
/ Gene sequencing
/ Genome, Plant
/ Genomes
/ Hybridization, Genetic
/ Inbreeding
/ Incompatibility
/ Life Sciences
/ Petunia
/ Petunia - genetics
/ Petunia hybrida
/ Plant reproduction
/ Plant Sciences
/ Pollination
/ Polyploidy
/ Self-incompatibility
/ Solanaceae
/ Symbiosis
/ Tomatoes
/ Transcription factors
/ Vegetal Biology
/ Whole genome sequencing
2016
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Insight into the evolution of the Solanaceae from the parental genomes of Petunia hybrida
Journal Article
Insight into the evolution of the Solanaceae from the parental genomes of Petunia hybrida
2016
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Overview
Petunia hybrida is a popular bedding plant that has a long history as a genetic model system. We report the whole-genome sequencing and assembly of inbred derivatives of its two wild parents, P. axillaris N and P. inflata S6. The assemblies include 91.3% and 90.2% coverage of their diploid genomes (1.4 Gb; 2n = 14) containing 32,928 and 36,697 protein-coding genes, respectively. The genomes reveal that the Petunia lineage has experienced at least two rounds of hexaploidization: the older gamma event, which is shared with most Eudicots, and a more recent Solanaceae event that is shared with tomato and other solanaceous species. Transcription factors involved in the shift from bee to moth pollination reside in particularly dynamic regions of the genome, which may have been key to the remarkable diversity of floral colour patterns and pollination systems. The high-quality genome sequences will enhance the value of Petunia as a model system for research on unique biological phenomena such as small RNAs, symbiosis, self-incompatibility and circadian rhythms.
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