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Bacterial cell surface characterization by phage display coupled to high-throughput sequencing
by
Jain, Ruchi
, Grun, Casey N.
, Shoemaker, Charles B.
, Kazmierczak, Barbara I.
, Schniederberend, Maren
, Nelson, Bryce
in
13/31
/ 45/23
/ 45/77
/ 631/114/2404
/ 631/1647/2163
/ 631/326/1321
/ 631/326/421
/ 82/1
/ 82/80
/ 82/83
/ 96
/ Antibodies
/ Antigens
/ Antimicrobial agents
/ Antimicrobial resistance
/ Bacteria
/ Biological activity
/ Camelids
/ Cell Membrane - metabolism
/ Cell surface
/ Cell Surface Display Techniques - methods
/ Cells
/ Deoxyribonucleic acid
/ DNA
/ DNA fingerprinting
/ DNA sequencing
/ Drug resistance
/ Gene sequencing
/ Genotypes
/ High-Throughput Nucleotide Sequencing - methods
/ Humanities and Social Sciences
/ Identification methods
/ Immunoglobulins
/ Infectious diseases
/ Information processing
/ Medicine
/ multidisciplinary
/ Multiplexing
/ Next-generation sequencing
/ Panning
/ Peptide Library
/ Phage display
/ Phages
/ Proteins
/ Pseudomonas aeruginosa
/ Pseudomonas aeruginosa - genetics
/ Reagents
/ Science
/ Science (multidisciplinary)
/ Single-Domain Antibodies - genetics
/ Surface properties
/ Surveying
/ Virulence
/ Virulence factors
/ Virulence Factors - genetics
2024
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Bacterial cell surface characterization by phage display coupled to high-throughput sequencing
by
Jain, Ruchi
, Grun, Casey N.
, Shoemaker, Charles B.
, Kazmierczak, Barbara I.
, Schniederberend, Maren
, Nelson, Bryce
in
13/31
/ 45/23
/ 45/77
/ 631/114/2404
/ 631/1647/2163
/ 631/326/1321
/ 631/326/421
/ 82/1
/ 82/80
/ 82/83
/ 96
/ Antibodies
/ Antigens
/ Antimicrobial agents
/ Antimicrobial resistance
/ Bacteria
/ Biological activity
/ Camelids
/ Cell Membrane - metabolism
/ Cell surface
/ Cell Surface Display Techniques - methods
/ Cells
/ Deoxyribonucleic acid
/ DNA
/ DNA fingerprinting
/ DNA sequencing
/ Drug resistance
/ Gene sequencing
/ Genotypes
/ High-Throughput Nucleotide Sequencing - methods
/ Humanities and Social Sciences
/ Identification methods
/ Immunoglobulins
/ Infectious diseases
/ Information processing
/ Medicine
/ multidisciplinary
/ Multiplexing
/ Next-generation sequencing
/ Panning
/ Peptide Library
/ Phage display
/ Phages
/ Proteins
/ Pseudomonas aeruginosa
/ Pseudomonas aeruginosa - genetics
/ Reagents
/ Science
/ Science (multidisciplinary)
/ Single-Domain Antibodies - genetics
/ Surface properties
/ Surveying
/ Virulence
/ Virulence factors
/ Virulence Factors - genetics
2024
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Bacterial cell surface characterization by phage display coupled to high-throughput sequencing
by
Jain, Ruchi
, Grun, Casey N.
, Shoemaker, Charles B.
, Kazmierczak, Barbara I.
, Schniederberend, Maren
, Nelson, Bryce
in
13/31
/ 45/23
/ 45/77
/ 631/114/2404
/ 631/1647/2163
/ 631/326/1321
/ 631/326/421
/ 82/1
/ 82/80
/ 82/83
/ 96
/ Antibodies
/ Antigens
/ Antimicrobial agents
/ Antimicrobial resistance
/ Bacteria
/ Biological activity
/ Camelids
/ Cell Membrane - metabolism
/ Cell surface
/ Cell Surface Display Techniques - methods
/ Cells
/ Deoxyribonucleic acid
/ DNA
/ DNA fingerprinting
/ DNA sequencing
/ Drug resistance
/ Gene sequencing
/ Genotypes
/ High-Throughput Nucleotide Sequencing - methods
/ Humanities and Social Sciences
/ Identification methods
/ Immunoglobulins
/ Infectious diseases
/ Information processing
/ Medicine
/ multidisciplinary
/ Multiplexing
/ Next-generation sequencing
/ Panning
/ Peptide Library
/ Phage display
/ Phages
/ Proteins
/ Pseudomonas aeruginosa
/ Pseudomonas aeruginosa - genetics
/ Reagents
/ Science
/ Science (multidisciplinary)
/ Single-Domain Antibodies - genetics
/ Surface properties
/ Surveying
/ Virulence
/ Virulence factors
/ Virulence Factors - genetics
2024
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Bacterial cell surface characterization by phage display coupled to high-throughput sequencing
Journal Article
Bacterial cell surface characterization by phage display coupled to high-throughput sequencing
2024
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Overview
The remarkable capacity of bacteria to adapt in response to selective pressures drives antimicrobial resistance.
Pseudomonas aeruginosa
illustrates this point, establishing chronic infections during which it evolves to survive antimicrobials and evade host defenses. Many adaptive changes occur on the
P. aeruginosa
cell surface but methods to identify these are limited. Here we combine phage display with high-throughput DNA sequencing to create a high throughput, multiplexed technology for surveying bacterial cell surfaces, Phage-seq. By applying phage display panning to hundreds of bacterial genotypes and analyzing the dynamics of the phage display selection process, we capture important biological information about cell surfaces. This approach also yields camelid single-domain antibodies that recognize key
P. aeruginosa
virulence factors on live cells. These antibodies have numerous potential applications in diagnostics and therapeutics. We propose that Phage-seq establishes a powerful paradigm for studying the bacterial cell surface by identifying and profiling many surface features in parallel.
Methods to identify bacterial cell surface adaptations are limited. The authors combine phage display with high-throughput DNA sequencing to create a highly-multiplexed technology for surveying bacterial cell surfaces.
Publisher
Nature Publishing Group UK,Nature Publishing Group,Nature Portfolio
Subject
/ 45/23
/ 45/77
/ 82/1
/ 82/80
/ 82/83
/ 96
/ Antigens
/ Bacteria
/ Camelids
/ Cell Surface Display Techniques - methods
/ Cells
/ DNA
/ High-Throughput Nucleotide Sequencing - methods
/ Humanities and Social Sciences
/ Medicine
/ Panning
/ Phages
/ Proteins
/ Pseudomonas aeruginosa - genetics
/ Reagents
/ Science
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