Journal Article

Integration of Continuous-Time Dynamics in a Spiking Neural Network Simulator

Dahmen, David, Schuecker, Jannis, Bolten, Matthias, Helias, Moritz, Diesmann, Markus, Hahne, Jan, Frommer, Andreas

2017

Overview

Contemporary modeling approaches to the dynamics of neural networks include two important classes of models: biologically grounded spiking neuron models and functionally inspired rate-based units. We present a unified simulation framework that supports the combination of the two for multi-scale modeling, enables the quantitative validation of mean-field approaches by spiking network simulations, and provides an increase in reliability by usage of the same simulation code and the same network model specifications for both model classes. While most spiking simulations rely on the communication of discrete events, rate models require time-continuous interactions between neurons. Exploiting the conceptual similarity to the inclusion of gap junctions in spiking network simulations, we arrive at a reference implementation of instantaneous and delayed interactions between rate-based models in a spiking network simulator. The separation of rate dynamics from the general connection and communication infrastructure ensures flexibility of the framework. In addition to the standard implementation we present an iterative approach based on waveform-relaxation techniques to reduce communication and increase performance for large-scale simulations of rate-based models with instantaneous interactions. Finally we demonstrate the broad applicability of the framework by considering various examples from the literature, ranging from random networks to neural-field models. The study provides the prerequisite for interactions between rate-based and spiking models in a joint simulation.

• Publisher: Frontiers Research Foundation,Frontiers Media S.A
• Subject: Firing pattern / Gap junctions / Neural networks / Neurons / Neuroscience / Neurosciences / parallelization / Population / rate models / spiking neural network simulator / stochastic (delay) differential equations / supercomputing / Theory / waveform relaxation