Journal Article

Discovery of Potential Antiviral Compounds against Hendra Virus by Targeting Its Receptor-Binding Protein (G) Using Computational Approaches

Ahmad, Faisal, Ahmad, Sajjad, Albutti, Aqel, Tariq, Muhammad Hamza, Din, Ghufranud, Tahir ul Qamar, Muhammad

2022

Overview

Hendra virus (HeV) belongs to the paramyxoviridae family of viruses which is associated with the respiratory distress, neurological illness, and potential fatality of the affected individuals. So far, no competitive approved therapeutic substance is available for HeV. For that reason, the current research work was conducted to propose some novel compounds, by adopting a Computer Aided Drug Discovery approach, which could be used to combat HeV. The G attachment Glycoprotein (Ggp) of HeV was selected to achieve the primary objective of this study, as this protein makes the entry of HeV possible in the host cells. Briefly, a library of 6000 antiviral compounds was screened for potential drug-like properties, followed by the molecular docking of short-listed compounds with the Protein Data Bank (PDB) structure of Ggp. Docked complexes of top two hits, having maximum binding affinities with the active sites of Ggp, were further considered for molecular dynamic simulations of 200 ns to elucidate the results of molecular docking analysis. MD simulations and Molecular Mechanics Energies combined with the Generalized Born and Surface Area (MMGBSA) or Poisson–Boltzmann and Surface Area (MMPBSA) revealed that both docked complexes are stable in nature. Furthermore, the same methodology was used between lead compounds and HeV Ggp in complex with its functional receptor in human, Ephrin-B2. Surprisingly, no major differences were found in the results, which demonstrates that our identified compounds can also perform their action even when the Ggp is attached to the Ephrin-B2 ligand. Therefore, in light of all of these results, we strongly suggest that compounds (S)-5-(benzylcarbamoyl)-1-(2-(4-methyl-2-phenylpiperazin-1-yl)-2-oxoethyl)-6-oxo-3,6-dihydropyridin-1-ium-3-ide and 5-(cyclohexylcarbamoyl)-1-(2-((2-(3-fluorophenyl)-2-methylpropyl)amino)-2-oxoethyl)-6-oxo-3,6-dihydropyridin-1-ium-3-ide could be considered as potential therapeutic agents against HeV; however, further in vitro and in vivo experiments are required to validate this study.

• Publisher: MDPI AG,MDPI
• Subject: Antiviral Agents - chemistry / Antiviral Agents - metabolism / Antiviral drugs / Computational Chemistry - methods / Dengue fever / drug discovery / Ephrin-B2 - chemistry / Ephrin-B2 - metabolism / Epidemics / Fatalities / Genomes / Glycoproteins / Hendra virus / Hendra Virus - drug effects / Humans / Hydrogen Bonding / Ligands / molecular docking / Molecular Docking Simulation / Molecular Dynamics Simulation / molecular dynamics simulations / Mortality / Pathogens / Pharmacokinetics / Protein Binding / Proteins / Public health / Receptors, Virus - chemistry / Receptors, Virus - metabolism / Severe acute respiratory syndrome coronavirus 2 / Small Molecule Libraries / Viral Fusion Proteins - antagonists & inhibitors / Viral Fusion Proteins - chemistry / Viral Fusion Proteins - metabolism / Viruses / Water - chemistry / Zoonoses