Journal Article

Autophagy-Related Genes Are Involved in the Progression and Prognosis of Asthma and Regulate the Immune Microenvironment

Wang, Ji, Lyu, Mingsheng, Li, Wanyang, Yang, Fan, Zhao, Xiaoshan, Zhu, Haoyue, Li, Wenle, Li, Zhuqing, Chen, Shunqi, Kong, Jingwei, Zong, Yuhan

2022

Overview

Autophagy has been proven to play an important role in the pathogenesis of asthma and the regulation of the airway epithelial immune microenvironment. However, a systematic analysis of the clinical importance of autophagy-related genes (ARGs) regulating the immune microenvironment in patients with asthma remains lacking. Clustering based on the k-means unsupervised clustering method was performed to identify autophagy-related subtypes in asthma. ARG-related diagnostic markers in low-autophagy subtypes were screened, the infiltration of immune cells in the airway epithelium was evaluated by the CIBERSORT, and the correlation between diagnostic markers and infiltrating immune cells was analyzed. On the basis of the expression of ARGs and combined with asthma control, a risk prediction model was established and verified by experiments. A total of 66 differentially expressed ARGs and 2 subtypes were identified between mild to moderate and severe asthma. Significant differences were observed in asthma control and FEV1 reversibility between the two subtypes, and the low-autophagy subtype was closely associated with severe asthma, energy metabolism, and hormone metabolism. The autophagy gene was identified as a diagnostic marker and was related to the infiltration of immune cells, such as activated mast cells and neutrophils. Combined with asthma control, a risk prediction model was constructed, the expression of five risk genes was supported by animal experiments, was established for ARGs related to the prediction model. Autophagy plays a crucial role in the diversity and complexity of the asthma immune microenvironment and has clinical value in treatment response and prognosis.

• Publisher: Frontiers Media SA,Frontiers Media S.A
• Subject: Algorithms / Asthma / Autophagy / autophagy-related genes / Cluster analysis / diagnostic model / Energy metabolism / Epithelium / Gene expression / immune cell / Immunology / Infiltration / Laboratory animals / Leukocytes (neutrophilic) / Mast cells / Medical research / Microenvironments / Neutrophils / Prediction models / Prognosis / Proteins / Respiratory tract / Software packages / Support vector machines / Traditional Chinese medicine