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The Genome of the Sea Urchin Strongylocentrotus purpuratus

by Voronina, Ekaterina , Rawson, Amanda P. , Adams, Nikki , Gonzalez-Garay, Manuel L. , Obar, Robert A. , Stolc, Viktor , Berney, Kevin , Elsik, Christine G. , Churcher, Allison M. , Foltz, Kathy R. , Sapojnikov, Victor , Gibbs, Richard A. , Zhang, Lan , Gibbons, Ian R. , Fowler, Jerry , Coffman, James A. , Gold, Bert , Nazareth, Lynne V. , Nam, Jongmin , Cole, Bryan , Hume, Jennifer , Okwuonu, Geoffrey , Mu, Xiuqian , Mulner-Lorillon, Odile , Agca, Cavit , Maglott, Donna , Cosson, Bertrand , Stegeman, John J. , Materna, Stefan C. , Croce, Jenifer , Kiyama, Takae , Majeske, Audrey J. , Robertson, Anthony J. , Range, Ryan , Satija, Rahul , Cheung, Rocky , Chacko, Joseph , Nomura, Mamoru , Lewis, Lora , Morris, Robert L. , Fernandez-Guerra, Antonio , Smith, L. Courtney , Song, Xingzhi , Parker, David , McCafferty, Shawn S. , Garfield, David , Jackson, LaRonda , Hussain, Sofia , Musante, Ashlan M. , Samanta, Manoj P. , Chen, Lili , Ermolaeva, Olga , Liang, Shuguang , Thomason, Rebecca , Song, Jia L. , Cohen, Avis H. , Xu, Ronghui , Heesun, Shin , Solovyev, Victor , Messier, Cynthia , Terwilliger, David P. , Burke, Robert D. , Su, Yi-Hsien , Loza-Coll, Mariano , Allgood, Erin L. , Wi

in Animals / bacterial artificial chromosomes / Biochemistry, Molecular Biology / Biology / Calcification / Calcification, Physiologic / Cell Adhesion Molecules / Cell Adhesion Molecules - genetics / Cell Adhesion Molecules - physiology / Chordata / clones / Complement Activation / Complement Activation - genetics / Computational Biology / Developmental / DNA / Echinoderms / embryology / Embryonic Development / Embryonic Development - genetics / Embryos / Evolution / Evolution, Molecular / Gene Expression Regulation / Gene Expression Regulation, Developmental / Genes / genetics / Genome / Genomes / Genomics / heterozygosity / Immunity / Immunity, Innate / Immunity, Innate - genetics / Immunologic Factors / Immunologic Factors - genetics / Immunologic Factors - physiology / immunology / Innate / Life Sciences / Male / MEDICIN / MEDICINE / Molecular / Natural sciences / Naturvetenskap / Nervous System Physiological Phenomena / Physiologic / physiology / Proteins / Proteins - genetics / Proteins - physiology / Receptors / Research Article / Sea urchins / Sequence Analysis / Sequence Analysis, DNA / Sequencing / Signal Transduction / Strongylocentrotus purpuratus / Strongylocentrotus purpuratus - embryology / Strongylocentrotus purpuratus - genetics / Strongylocentrotus purpuratus - immunology / Strongylocentrotus purpuratus - physiology / Transcription Factors / Transcription Factors - genetics / Vertebrates

2006

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2006

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2006

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Journal Article

The Genome of the Sea Urchin Strongylocentrotus purpuratus

Voronina, Ekaterina,

Rawson, Amanda P.,

Adams, Nikki,

Gonzalez-Garay, Manuel L.,

Obar, Robert A.,

Stolc, Viktor,

Berney, Kevin,

Elsik, Christine G.,

Churcher, Allison M.,

Foltz, Kathy R.,

Sapojnikov, Victor,

Gibbs, Richard A.,

Zhang, Lan,

Gibbons, Ian R.,

Fowler, Jerry,

Coffman, James A.,

Gold, Bert,

Nazareth, Lynne V.,

Nam, Jongmin,

Cole, Bryan,

Hume, Jennifer,

Okwuonu, Geoffrey,

Mu, Xiuqian,

Mulner-Lorillon, Odile,

Agca, Cavit,

Maglott, Donna,

Cosson, Bertrand,

Stegeman, John J.,

Materna, Stefan C.,

Croce, Jenifer,

Kiyama, Takae,

Majeske, Audrey J.,

Robertson, Anthony J.,

Range, Ryan,

Satija, Rahul,

Cheung, Rocky,

Chacko, Joseph,

Nomura, Mamoru,

Lewis, Lora,

Morris, Robert L.,

Fernandez-Guerra, Antonio,

Smith, L. Courtney,

Song, Xingzhi,

Parker, David,

McCafferty, Shawn S.,

Garfield, David,

Jackson, LaRonda,

Hussain, Sofia,

Musante, Ashlan M.,

Samanta, Manoj P.,

Chen, Lili,

Ermolaeva, Olga,

Liang, Shuguang,

Thomason, Rebecca,

Song, Jia L.,

Cohen, Avis H.,

Xu, Ronghui,

Heesun, Shin,

Solovyev, Victor,

Messier, Cynthia,

Terwilliger, David P.,

Burke, Robert D.,

Su, Yi-Hsien,

Loza-Coll, Mariano,

Allgood, Erin L.,

2006

Overview

We report the sequence and analysis of the 814-megabase genome of the sea urchin Strongylocentrotus purpuratus, a model for developmental and systems biology. The sequencing strategy combined whole-genome shotgun and bacterial artificial chromosome (BAC) sequences. This use of BAC clones, aided by a pooling strategy, overcame difficulties associated with high heterozygosity of the genome. The genome encodes about 23,300 genes, including many previously thought to be vertebrate innovations or known only outside the deuterostomes. This echinoderm genome provides an evolutionary outgroup for the chordates and yields insights into the evolution of deuterostomes.

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Publisher

American Association for the Advancement of Science,American Association for the Advancement of Science (AAAS)

Subject

Animals

/ bacterial artificial chromosomes

/ Biochemistry, Molecular Biology

/ Biology

/ Calcification

/ Calcification, Physiologic

/ Cell Adhesion Molecules