Journal Article

Diversity and plant growth promoting properties of rhizobia isolated from root nodules of Ononis arvensis

Wójcik, Magdalena, Małek, Wanda, Wdowiak-Wróbel, Sylwia, Kalita, Michał, Karaś, Magdalena, Marek-Kozaczuk, Monika

2017

Overview

This is the first report describing isolates from root nodules of Ononis arvensis (field restharrow). The aim of this investigation was to describe the diversity, phylogeny, and plant growth promoting features of microsymbionts of O. arvensis , i.e., a legume plant growing in different places of the southern part of Poland. Twenty-nine bacterial isolates were characterized in terms of their phenotypic properties, genome fingerprinting, and comparative analysis of their 16S rRNA, nodC and acdS gene sequences. Based on the nodC and 16S rRNA gene phylogenies, the O. arvensis symbionts were grouped close to bacteria of the genera Rhizobium and Mesorhizobium , which formed monophyletic clusters. The acdS gene sequences of all the isolates tested exhibited the highest similarities to the corresponding gene sequences of genus Mesorhizobium strains. The presence of the acdS genes in the genomes of rhizobia specific for O. arvensis implies that these bacteria may promote the growth and development of their host plant in stress conditions. The isolated bacteria showed a high genomic diversity and, in the BOX-PCR reaction, all of them (except three) exhibited DNA fingerprints specific only for them. Our studies showed that restharrow isolates formed effective symbiotic interactions with their native host ( O. arvensis ) and Ononis spinosa but not with Trifolium repens and Medicago sativa belonging to the same tribe Trifolieae as Ononis species and not with Lotus corniculatus , representing the tribe Loteae.

• Publisher: Springer International Publishing,Springer Nature B.V
• Subject: Alfalfa / Bacteria / Biodiversity / Biomedical and Life Sciences / Clusters / Comparative analysis / DNA fingerprinting / DNA, Bacterial / Fabaceae / Gene sequencing / Genes / Genetic fingerprinting / genetic variation / Genomes / growth and development / Host plants / Legumes / Life Sciences / Lotus corniculatus / Medicago sativa / Medical Microbiology / Mesorhizobium / Microbiology / microsymbionts / monophyly / Nodules / nucleotide sequences / Ononis - microbiology / Ononis arvensis / Ononis spinosa / Original Paper / phenotype / Phylogenetics / Phylogeny / Plant growth / Plant Sciences / Poland / Polymerase chain reaction / Rhizobium / Rhizobium - growth & development / Rhizobium - physiology / ribosomal RNA / RNA, Ribosomal, 16S / Root nodules / Root Nodules, Plant - microbiology / rRNA 16S / Sequence Analysis, DNA / Soil Science & Conservation / Symbionts / Symbiosis / Trifolium repens