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Patterns and ecological drivers of ocean viral communities

by Not, F. , Chaffron, S. , Gregory, A. C. , Hingamp, P. , Sullivan, M. B. , Gasol, J. M. , Pesant, S. , Bork, P. , Wincker, P. , Ogata, H. , Acinas, S. G. , Iudicone, D. , Gorsky, G. , Sunagawa, S. , Guidi, L. , Picheral, M. , Karsenti, E. , Schwenck, S. M. , Doulcier, S. Roux G. , Alberti, A. , Poulos, B. T. , Searson, S. , Bowler, C. , Kandels-Lewis, S. , Ignacio-Espinoza, J. C. , Speich, S. , Brum, J. R. , Dimier, C. , de Vargas, C. , Cruaud, C.

in Biodiversity and Ecology / biogeography / Clusters / Communities / Community structure / data collection / Deoxyribonucleic acid / DNA / Ecosystems / Environmental conditions / environmental factors / Environmental Sciences / Expeditions / gene flow / Genes / Life Sciences / Marine ecosystems / metagenomics / Microbiology and Parasitology / Oceans / Population number / population size / Proteins / RESEARCH ARTICLE ABSTRACTS / sampling / Seed banks / Upper ocean / Virology / Viruses

2015

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Patterns and ecological drivers of ocean viral communities

2015

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Patterns and ecological drivers of ocean viral communities

2015

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Journal Article

Patterns and ecological drivers of ocean viral communities

Not, F.,

Chaffron, S.,

Gregory, A. C.,

Hingamp, P.,

Sullivan, M. B.,

Gasol, J. M.,

Pesant, S.,

Bork, P.,

Wincker, P.,

Ogata, H.,

Acinas, S. G.,

Iudicone, D.,

Gorsky, G.,

Sunagawa, S.,

Guidi, L.,

Picheral, M.,

Karsenti, E.,

Schwenck, S. M.,

Doulcier, S. Roux G.,

Alberti, A.,

Poulos, B. T.,

Searson, S.,

Bowler, C.,

Kandels-Lewis, S.,

Ignacio-Espinoza, J. C.,

Speich, S.,

Brum, J. R.,

Dimier, C.,

de Vargas, C.,

Cruaud, C.

2015

Overview

Viruses influence ecosystems by modulating microbial population size, diversity, metabolic outputs, and gene flow. Here, we use quantitative double-stranded DNA (dsDNA) viral-fraction metagenomes (viromes) and whole viral community morphological data sets from 43 Tara Oceans expedition samples to assess viral community patterns and structure in the upper ocean. Protein cluster cataloging defined pelagic upper-ocean viral community pan and core gene sets and suggested that this sequence space is well-sampled. Analyses of viral protein clusters, populations, and morphology revealed biogeographic patterns whereby viral communities were passively transported on oceanic currents and locally structured by environmental conditions that affect host community structure. Together, these investigations establish a global ocean dsDNA viromic data set with analyses supporting the seed-bank hypothesis to explain how oceanic viral communities maintain high local diversity.

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Publisher

American Association for the Advancement of Science,The American Association for the Advancement of Science,American Association for the Advancement of Science (AAAS)

Subject

Biodiversity and Ecology

/ biogeography

/ Clusters

/ Communities

/ Community structure

/ data collection

/ Deoxyribonucleic acid

/ DNA

/ Ecosystems

/ Environmental conditions

/ environmental factors