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Evidence for Network Evolution in an Arabidopsis Interactome Map

by Gai, Lantian , Unité de recherche en génomique végétale (URGV) ; Institut National de la Recherche Agronomique (INRA)-Université d'Évry-Val-d'Essonne (UEVE)-Centre National de la Recherche Scientifique (CNRS) , Gilles, Patrick , University of Warwick [Coventry] , Centre National de la Recherche Scientifique (CNRS) , Shinn, Paul , Swamilingiah, Geetha M , Bautista, Vanessa , Boston University [Boston] (BU) , Przulj, Natasa , Carvunis, Anne-Ruxandra , Patnaik, Suswapna , Hao, Tong , Mukhtar, M. Shahid , Waaijers, Selma , Santhanam, Balaji , Taşan, Murat , Chen, Huaming , Harvard Medical School [Boston] (HMS) , Salk Institute for Biological Studies ; Plant Molecular and Cellular Biology Laboratory , Cusick, Michael E , Ramaswamy, Gopalakrishna , Duarte, Melissa , de Los Reyes, Chris , Byrdsong, Danielle , department of biological chemistry and molecular pharmacology ; Harvard Medical School [Boston] (HMS) , Vidal, Marc , Monachello, Dario , Milenkovic, Tijana , Hill, David E , Life Technologies ; Partenaires INRAE , Matrubutham, Uday , Schmitz, Robert J , Université de Liège = Universi

in 14-3-3 Proteins - metabolism / Arabidopsis - genetics / Arabidopsis - metabolism / Arabidopsis Proteins - genetics / Arabidopsis Proteins - metabolism / Biological and medical sciences / Cell physiology / Community structure / Divergent evolution / Evolution / Evolution, Molecular / Fundamental and applied biological sciences. Psychology / Gene duplication / General aspects, methods / Genes, Plant / Genetics & genetic processes / Génétique & processus génétiques / Immune system / Life Sciences / Medical research / Networks / Pathogens / Plant Growth Regulators - metabolism / Plant physiology and development / Plants / Protein Interaction Mapping / Proteins / Proteome / Research fellowships / Sciences du vivant / Signal Transduction / Transcription Factors - metabolism / Ubiquitination / Vegetal Biology / Yeasts

2011

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Evidence for Network Evolution in an Arabidopsis Interactome Map

2011

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Evidence for Network Evolution in an Arabidopsis Interactome Map

2011

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Journal Article

Evidence for Network Evolution in an Arabidopsis Interactome Map

Gai, Lantian,

Unité de recherche en génomique végétale (URGV) ; Institut National de la Recherche Agronomique (INRA)-Université d'Évry-Val-d'Essonne (UEVE)-Centre National de la Recherche Scientifique (CNRS),

Gilles, Patrick,

University of Warwick [Coventry],

Centre National de la Recherche Scientifique (CNRS),

Shinn, Paul,

Swamilingiah, Geetha M,

Bautista, Vanessa,

Boston University [Boston] (BU),

Przulj, Natasa,

Carvunis, Anne-Ruxandra,

Patnaik, Suswapna,

Hao, Tong,

Mukhtar, M. Shahid,

Waaijers, Selma,

Santhanam, Balaji,

Taşan, Murat,

Chen, Huaming,

Harvard Medical School [Boston] (HMS),

Salk Institute for Biological Studies ; Plant Molecular and Cellular Biology Laboratory,

Cusick, Michael E,

Ramaswamy, Gopalakrishna,

Duarte, Melissa,

de Los Reyes, Chris,

Byrdsong, Danielle,

department of biological chemistry and molecular pharmacology ; Harvard Medical School [Boston] (HMS),

Vidal, Marc,

Monachello, Dario,

Milenkovic, Tijana,

Hill, David E,

Life Technologies ; Partenaires INRAE,

Matrubutham, Uday,

Schmitz, Robert J,

Université de Liège = Universi

2011

Overview

Plants have unique features that evolved in response to their environments and ecosystems. A full account of the complex cellular networks that underlie plant-specific functions is still missing. We describe a proteome-wide binary protein-protein interaction map for the interactome network of the plant Arabidopsis thaliana containing about 6200 highly reliable interactions between about 2700 proteins. A global organization of plant biological processes emerges from community analyses of the resulting network, together with large numbers of novel hypothetical functional links between proteins and pathways. We observe a dynamic rewiring of interactions following gene duplication events, providing evidence for a model of evolution acting upon interactome networks. This and future plant interactome maps should facilitate systems approaches to better understand plant biology and improve crops.

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Publisher

American Association for the Advancement of Science (AAAS),CCSD,American Association for the Advancement of Science,The American Association for the Advancement of Science

Subject

14-3-3 Proteins - metabolism

/ Arabidopsis - genetics

/ Arabidopsis - metabolism

/ Arabidopsis Proteins - genetics

/ Arabidopsis Proteins - metabolism

/ Biological and medical sciences

/ Cell physiology

/ Community structure

/ Divergent evolution

/ Evolution

/ Evolution, Molecular