Journal Article

Metabolite profiling of Douglas-fir (Pseudotsuga menziesii) field trials reveals strong environmental and weak genetic variation

Kang, Kyu-Young, Ukrainetz, Nicholas K, Mansfield, Shawn D, Robinson, Andrew R

2007

Overview

The primary objective of this study was to assess metabolomics for its capacity to discern biological variation among 10 full-sib families of a Douglas-fir tree breeding population, replicated on two sites. The differential accumulation of small metabolites in developing xylem was examined through metabolite profiles (139 metabolites common to 181 individual trees) generated by gas chromatography mass spectrometry and a series of statistical analyses that incorporated family, site, and tree growth and quantitative phenotypic wood traits (wood density, microfibril angle, wood chemistry and fiber morphology). Multivariate discriminant, canonical discriminant and factor analyses and broad-sense heritabilities revealed that metabolic and phenotypic traits alike were strongly related to site, while similar associations relating to genetic (family) structure were weak in comparison. Canonical correlation analysis subsequently identified correlations between specific phenotypic traits (i.e. tree growth, fibre morphology and wood chemistry) and metabolic traits (i.e. carbohydrate and lignin biosynthetic metabolites), demonstrating a coherent relationship between genetics, metabolism, environmental and phenotypic expression in wood-forming tissue. The association between cambial metabolites and tree phenotype, as revealed by metabolite profiling, demonstrates the value of metabolomics for systems biology approaches to understanding tree growth and secondary cell wall biosynthesis in plants.

• Publisher: Oxford, UK : Blackwell Publishing Ltd,Blackwell Science,Blackwell Publishing Ltd
• Subject: biosynthesis / British Columbia / cambium / Carbohydrate metabolism / carbohydrates / cell walls / classification / Datasets / Douglas-fir (Pseudotsuga menziesii) / Environment / field experimentation / gas chromatography mass spectrometry (GC-MS) / Gas Chromatography-Mass Spectrometry / Gene Expression Profiling / Genetic Variation / genetics / genetics x environment / genetics × environment / Heritability / Lignin / Metabolism / metabolite profiling / Metabolites / metabolomics / Multivariate Analysis / phenotype / Phenotypic traits / Plants / Pseudotsuga / Pseudotsuga - classification / Pseudotsuga - genetics / Pseudotsuga - metabolism / Pseudotsuga menziesii / quantitative phenotypic traits / Quantitative Trait Loci / Quantitative traits / statistical analysis / tree breeding / tree growth / trees / wood / wood chemistry / wood chemistry and density / wood density / xylem