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Widespread of horizontal gene transfer in the human genome
by
Tsai, Lillian
, Sun, Chen
, Li, Yulong
, Hua, Nan
, Huang, Wenze
, Wei, Chaochun
in
Animal Genetics and Genomics
/ Base Composition
/ Biomedical and Life Sciences
/ Candidate Horizontal Gene Transfer
/ Chromosomes
/ Chromosomes, Human - genetics
/ Comparative and evolutionary genomics
/ Computational Biology
/ Evolution, Molecular
/ Gene transfer
/ Gene Transfer, Horizontal
/ Genes
/ Genome, Human
/ Genomes
/ Genomics
/ Great Conservation
/ Horizontal Gene Transfer
/ Horizontal Gene Transfer Event
/ Horizontal transfer
/ Humans
/ Length Coverage
/ Life Sciences
/ Mammals
/ Maximum likelihood method
/ Microarrays
/ Microbial Genetics and Genomics
/ Nematodes
/ Offspring
/ Phylogenetics
/ Phylogeny
/ Pipelines
/ Plant Genetics and Genomics
/ Prokaryotes
/ Proteomics
/ Research Article
/ Sequence Analysis, DNA
/ Vertebrates
2017
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Widespread of horizontal gene transfer in the human genome
by
Tsai, Lillian
, Sun, Chen
, Li, Yulong
, Hua, Nan
, Huang, Wenze
, Wei, Chaochun
in
Animal Genetics and Genomics
/ Base Composition
/ Biomedical and Life Sciences
/ Candidate Horizontal Gene Transfer
/ Chromosomes
/ Chromosomes, Human - genetics
/ Comparative and evolutionary genomics
/ Computational Biology
/ Evolution, Molecular
/ Gene transfer
/ Gene Transfer, Horizontal
/ Genes
/ Genome, Human
/ Genomes
/ Genomics
/ Great Conservation
/ Horizontal Gene Transfer
/ Horizontal Gene Transfer Event
/ Horizontal transfer
/ Humans
/ Length Coverage
/ Life Sciences
/ Mammals
/ Maximum likelihood method
/ Microarrays
/ Microbial Genetics and Genomics
/ Nematodes
/ Offspring
/ Phylogenetics
/ Phylogeny
/ Pipelines
/ Plant Genetics and Genomics
/ Prokaryotes
/ Proteomics
/ Research Article
/ Sequence Analysis, DNA
/ Vertebrates
2017
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Widespread of horizontal gene transfer in the human genome
by
Tsai, Lillian
, Sun, Chen
, Li, Yulong
, Hua, Nan
, Huang, Wenze
, Wei, Chaochun
in
Animal Genetics and Genomics
/ Base Composition
/ Biomedical and Life Sciences
/ Candidate Horizontal Gene Transfer
/ Chromosomes
/ Chromosomes, Human - genetics
/ Comparative and evolutionary genomics
/ Computational Biology
/ Evolution, Molecular
/ Gene transfer
/ Gene Transfer, Horizontal
/ Genes
/ Genome, Human
/ Genomes
/ Genomics
/ Great Conservation
/ Horizontal Gene Transfer
/ Horizontal Gene Transfer Event
/ Horizontal transfer
/ Humans
/ Length Coverage
/ Life Sciences
/ Mammals
/ Maximum likelihood method
/ Microarrays
/ Microbial Genetics and Genomics
/ Nematodes
/ Offspring
/ Phylogenetics
/ Phylogeny
/ Pipelines
/ Plant Genetics and Genomics
/ Prokaryotes
/ Proteomics
/ Research Article
/ Sequence Analysis, DNA
/ Vertebrates
2017
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Widespread of horizontal gene transfer in the human genome
Journal Article
Widespread of horizontal gene transfer in the human genome
2017
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Overview
Background
A fundamental concept in biology is that heritable material is passed from parents to offspring, a process called vertical gene transfer. An alternative mechanism of gene acquisition is through horizontal gene transfer (HGT), which involves movement of genetic materials between different species. Horizontal gene transfer has been found prevalent in prokaryotes but very rare in eukaryote. In this paper, we investigate horizontal gene transfer in the human genome.
Results
From the pair-wise alignments between human genome and 53 vertebrate genomes, 1,467 human genome regions (2.6 M bases) from all chromosomes were found to be more conserved with non-mammals than with most mammals. These human genome regions involve 642 known genes, which are enriched with ion binding. Compared to known horizontal gene transfer regions in the human genome, there were few overlapping regions, which indicated horizontal gene transfer is more common than we expected in the human genome.
Conclusions
Horizontal gene transfer impacts hundreds of human genes and this study provided insight into potential mechanisms of HGT in the human genome.
Publisher
BioMed Central,Springer Nature B.V,BMC
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