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Assessment of multi-population polygenic risk scores for lipid traits in African Americans
by
Liu, Shiying
, Drouet, Domenica E.
, Crawford, Dana C.
in
Adult
/ African Americans
/ Biorepository
/ Biotechnology industry
/ Black or African American - genetics
/ Cardiovascular Diseases - epidemiology
/ Cholesterol, LDL - genetics
/ Development and progression
/ Diabetes Mellitus, Type 2
/ Electronic health records
/ Epidemiology
/ Fenofibrate
/ Genetic aspects
/ Genetic risk scores
/ Genetics
/ Genome-Wide Association Study
/ Genomics
/ Humans
/ Lipids
/ Low density lipoproteins
/ Medical Genetics
/ Medical records
/ Native Americans
/ Polygenic risk scores
/ Risk Factors
/ Type 2 diabetes
2023
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Assessment of multi-population polygenic risk scores for lipid traits in African Americans
by
Liu, Shiying
, Drouet, Domenica E.
, Crawford, Dana C.
in
Adult
/ African Americans
/ Biorepository
/ Biotechnology industry
/ Black or African American - genetics
/ Cardiovascular Diseases - epidemiology
/ Cholesterol, LDL - genetics
/ Development and progression
/ Diabetes Mellitus, Type 2
/ Electronic health records
/ Epidemiology
/ Fenofibrate
/ Genetic aspects
/ Genetic risk scores
/ Genetics
/ Genome-Wide Association Study
/ Genomics
/ Humans
/ Lipids
/ Low density lipoproteins
/ Medical Genetics
/ Medical records
/ Native Americans
/ Polygenic risk scores
/ Risk Factors
/ Type 2 diabetes
2023
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Do you wish to request the book?
Assessment of multi-population polygenic risk scores for lipid traits in African Americans
by
Liu, Shiying
, Drouet, Domenica E.
, Crawford, Dana C.
in
Adult
/ African Americans
/ Biorepository
/ Biotechnology industry
/ Black or African American - genetics
/ Cardiovascular Diseases - epidemiology
/ Cholesterol, LDL - genetics
/ Development and progression
/ Diabetes Mellitus, Type 2
/ Electronic health records
/ Epidemiology
/ Fenofibrate
/ Genetic aspects
/ Genetic risk scores
/ Genetics
/ Genome-Wide Association Study
/ Genomics
/ Humans
/ Lipids
/ Low density lipoproteins
/ Medical Genetics
/ Medical records
/ Native Americans
/ Polygenic risk scores
/ Risk Factors
/ Type 2 diabetes
2023
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Assessment of multi-population polygenic risk scores for lipid traits in African Americans
Journal Article
Assessment of multi-population polygenic risk scores for lipid traits in African Americans
2023
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Overview
Polygenic risk scores (PRS) based on genome-wide discoveries are promising predictors or classifiers of disease development, severity, and/or progression for common clinical outcomes. A major limitation of most risk scores is the paucity of genome-wide discoveries in diverse populations, prompting an emphasis to generate these needed data for trans-population and population-specific PRS construction. Given diverse genome-wide discoveries are just now being completed, there has been little opportunity for PRS to be evaluated in diverse populations independent from the discovery efforts. To fill this gap, we leverage here summary data from a recent genome-wide discovery study of lipid traits (HDL-C, LDL-C, triglycerides, and total cholesterol) conducted in diverse populations represented by African Americans, Hispanics, Asians, Native Hawaiians, Native Americans, and others by the Population Architecture using Genomics and Epidemiology (PAGE) Study. We constructed lipid trait PRS using PAGE Study published genetic variants and weights in an independent African American adult patient population linked to de-identified electronic health records and genotypes from the Illumina Metabochip ( n = 3,254). Using multi-population lipid trait PRS, we assessed levels of association for their respective lipid traits, clinical outcomes (cardiovascular disease and type 2 diabetes), and common clinical labs. While none of the multi-population PRS were strongly associated with the tested trait or outcome, PRS LDL-C was nominally associated with cardiovascular disease. These data demonstrate the complexity in applying PRS to real-world clinical data even when data from multiple populations are available.
Publisher
PeerJ. Ltd,PeerJ Inc
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