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Structure and function of CarD, an essential mycobacterial transcription factor
by
Landick, Robert
, Stallings, Christina L.
, Darst, Seth A.
, Weiss, Leslie A.
, Glickman, Michael S.
, Campbell, Elizabeth A.
, Leon, Katherine
, Garner, Ashley L.
, Westblade, Lars F.
, Srivastava, Devendra B.
, Osmundson, Joseph
in
Bacteria
/ Bacterial Proteins - chemistry
/ Bacterial Proteins - genetics
/ Bacterial Proteins - metabolism
/ Biological Sciences
/ Crystal structure
/ Deoxyribonucleic acid
/ DNA
/ DNA conformation
/ DNA, Bacterial - chemistry
/ DNA, Bacterial - genetics
/ DNA, Bacterial - metabolism
/ DNA-directed RNA polymerase
/ Mycobacterium
/ Mycobacterium smegmatis - chemistry
/ Mycobacterium smegmatis - genetics
/ Mycobacterium smegmatis - metabolism
/ Mycobacterium tuberculosis
/ Mycobacterium tuberculosis - chemistry
/ Mycobacterium tuberculosis - genetics
/ Mycobacterium tuberculosis - metabolism
/ Promoter regions
/ Promoter Regions, Genetic
/ Proteins
/ Regulator genes
/ RNA
/ RNA polymerase
/ Structure-Activity Relationship
/ Thermus
/ Thermus thermophilus
/ transcription (genetics)
/ transcription factors
/ Transcription Factors - chemistry
/ Transcription Factors - genetics
/ Transcription Factors - metabolism
/ Transcription, Genetic - physiology
/ Transcriptional regulatory elements
/ X-ray diffraction
2013
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Structure and function of CarD, an essential mycobacterial transcription factor
by
Landick, Robert
, Stallings, Christina L.
, Darst, Seth A.
, Weiss, Leslie A.
, Glickman, Michael S.
, Campbell, Elizabeth A.
, Leon, Katherine
, Garner, Ashley L.
, Westblade, Lars F.
, Srivastava, Devendra B.
, Osmundson, Joseph
in
Bacteria
/ Bacterial Proteins - chemistry
/ Bacterial Proteins - genetics
/ Bacterial Proteins - metabolism
/ Biological Sciences
/ Crystal structure
/ Deoxyribonucleic acid
/ DNA
/ DNA conformation
/ DNA, Bacterial - chemistry
/ DNA, Bacterial - genetics
/ DNA, Bacterial - metabolism
/ DNA-directed RNA polymerase
/ Mycobacterium
/ Mycobacterium smegmatis - chemistry
/ Mycobacterium smegmatis - genetics
/ Mycobacterium smegmatis - metabolism
/ Mycobacterium tuberculosis
/ Mycobacterium tuberculosis - chemistry
/ Mycobacterium tuberculosis - genetics
/ Mycobacterium tuberculosis - metabolism
/ Promoter regions
/ Promoter Regions, Genetic
/ Proteins
/ Regulator genes
/ RNA
/ RNA polymerase
/ Structure-Activity Relationship
/ Thermus
/ Thermus thermophilus
/ transcription (genetics)
/ transcription factors
/ Transcription Factors - chemistry
/ Transcription Factors - genetics
/ Transcription Factors - metabolism
/ Transcription, Genetic - physiology
/ Transcriptional regulatory elements
/ X-ray diffraction
2013
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Structure and function of CarD, an essential mycobacterial transcription factor
by
Landick, Robert
, Stallings, Christina L.
, Darst, Seth A.
, Weiss, Leslie A.
, Glickman, Michael S.
, Campbell, Elizabeth A.
, Leon, Katherine
, Garner, Ashley L.
, Westblade, Lars F.
, Srivastava, Devendra B.
, Osmundson, Joseph
in
Bacteria
/ Bacterial Proteins - chemistry
/ Bacterial Proteins - genetics
/ Bacterial Proteins - metabolism
/ Biological Sciences
/ Crystal structure
/ Deoxyribonucleic acid
/ DNA
/ DNA conformation
/ DNA, Bacterial - chemistry
/ DNA, Bacterial - genetics
/ DNA, Bacterial - metabolism
/ DNA-directed RNA polymerase
/ Mycobacterium
/ Mycobacterium smegmatis - chemistry
/ Mycobacterium smegmatis - genetics
/ Mycobacterium smegmatis - metabolism
/ Mycobacterium tuberculosis
/ Mycobacterium tuberculosis - chemistry
/ Mycobacterium tuberculosis - genetics
/ Mycobacterium tuberculosis - metabolism
/ Promoter regions
/ Promoter Regions, Genetic
/ Proteins
/ Regulator genes
/ RNA
/ RNA polymerase
/ Structure-Activity Relationship
/ Thermus
/ Thermus thermophilus
/ transcription (genetics)
/ transcription factors
/ Transcription Factors - chemistry
/ Transcription Factors - genetics
/ Transcription Factors - metabolism
/ Transcription, Genetic - physiology
/ Transcriptional regulatory elements
/ X-ray diffraction
2013
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Structure and function of CarD, an essential mycobacterial transcription factor
Journal Article
Structure and function of CarD, an essential mycobacterial transcription factor
2013
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Overview
CarD, an essential transcription regulator in Mycobacterium tuberculosis , directly interacts with the RNA polymerase (RNAP). We used a combination of in vivo and in vitro approaches to establish that CarD is a global regulator that stimulates the formation of RNAP-holoenzyme open promoter (RPo) complexes. We determined the X-ray crystal structure of Thermus thermophilus CarD, allowing us to generate a structural model of the CarD/RPo complex. On the basis of our structural and functional analyses, we propose that CarD functions by forming protein/protein and protein/DNA interactions that bridge the RNAP to the promoter DNA. CarD appears poised to interact with a DNA structure uniquely presented by the RPo: the splayed minor groove at the double-stranded/single-stranded DNA junction at the upstream edge of the transcription bubble. Thus, CarD uses an unusual mechanism for regulating transcription, sensing the DNA conformation where transcription bubble formation initiates.
Publisher
National Academy of Sciences,National Acad Sciences
Subject
/ Bacterial Proteins - chemistry
/ Bacterial Proteins - genetics
/ Bacterial Proteins - metabolism
/ DNA
/ Mycobacterium smegmatis - chemistry
/ Mycobacterium smegmatis - genetics
/ Mycobacterium smegmatis - metabolism
/ Mycobacterium tuberculosis - chemistry
/ Mycobacterium tuberculosis - genetics
/ Mycobacterium tuberculosis - metabolism
/ Proteins
/ RNA
/ Structure-Activity Relationship
/ Thermus
/ Transcription Factors - chemistry
/ Transcription Factors - genetics
/ Transcription Factors - metabolism
/ Transcription, Genetic - physiology
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