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Genomic and epidemiological monitoring of yellow fever virus transmission potential

by Goes de Jesus, J , Vasylyeva, T. I , Brito, M. G , Fonseca, V , Carroll, M , Pereira, G. C , Sequeira, P. C , Rocco, I. M , Mello, E. M , Nogueira, R. M. R , de Oliveira, T , Wu, C.-H , Abreu, R. G , Du Plessis, L , Mendonça, M. C. L , Silveira, P. P , Aguiar, R. S , Lourenco, J , Menezes, M. T , Giovanetti, M , Silva, M. V. F , Said, R. F. C , Quick, J , Garcia, M. H. O , Santana, L. F , Kroon, E. G , Pybus, O. G , Universidade Federal do Rio de Janeiro [Brasil] = Federal University of Rio de Janeiro [Brazil] = Université fédérale de Rio de Janeiro [Brésil] (UFRJ) , Rezende, I. M , ANR-10-LABX-0062,IBEID,Integrative Biology of Emerging Infectious Diseases , Chieppe, A. O , Funk, S , Kraemer, M. U. G , Lewandowski, K , Okumoto, O , Obolski, U , Rega Institute for Medical Research [Leuven] ; Catholic University of Leuven = Katholieke Universiteit Leuven (KU Leuven) , Laboratório de Biologia Molecular de Flavivírus [Rio de Janeiro] ; Instituto Oswaldo Cruz = Oswaldo Cruz Institute [Rio de Janeiro] (IOC) ; Fundação Oswaldo Cruz / Oswaldo Cruz Foundation (FIOCRUZ) ; Pasteur Network (Réseau Internat

in Aedes / Aedes - virology / Age composition / Age Factors / Animals / Aquatic insects / Brazil - epidemiology / Disease Outbreaks - prevention & control / Disease Outbreaks - statistics & numerical data / Disease transmission / Epidemics / Epidemiological Monitoring / Epidemiology / Evolution, Molecular / Fever / Genomes / Genomics / Genomics - methods / Humans / Life Sciences / Monitoring / Mosquitoes / Phylogeny / Polymerase Chain Reaction / Primates / Risk / Rural Urban Differences / Sex Factors / Spatio-Temporal Analysis / Vaccines / Vector-borne diseases / Viruses / Yellow Fever - epidemiology / Yellow Fever - prevention & control / Yellow Fever - transmission / Yellow Fever - virology / Yellow fever virus - classification / Yellow fever virus - genetics / Yellow fever virus - isolation & purification

2018

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Genomic and epidemiological monitoring of yellow fever virus transmission potential

2018

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2018

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Journal Article

Genomic and epidemiological monitoring of yellow fever virus transmission potential

Goes de Jesus, J,

Vasylyeva, T. I,

Brito, M. G,

Fonseca, V,

Carroll, M,

Pereira, G. C,

Sequeira, P. C,

Rocco, I. M,

Mello, E. M,

Nogueira, R. M. R,

de Oliveira, T,

Wu, C.-H,

Abreu, R. G,

Du Plessis, L,

Mendonça, M. C. L,

Silveira, P. P,

Aguiar, R. S,

Lourenco, J,

Menezes, M. T,

Giovanetti, M,

Silva, M. V. F,

Said, R. F. C,

Quick, J,

Garcia, M. H. O,

Santana, L. F,

Kroon, E. G,

Pybus, O. G,

Universidade Federal do Rio de Janeiro [Brasil] = Federal University of Rio de Janeiro [Brazil] = Université fédérale de Rio de Janeiro [Brésil] (UFRJ),

Rezende, I. M,

ANR-10-LABX-0062,IBEID,Integrative Biology of Emerging Infectious Diseases,

Chieppe, A. O,

Funk, S,

Kraemer, M. U. G,

Lewandowski, K,

Okumoto, O,

Obolski, U,

Rega Institute for Medical Research [Leuven] ; Catholic University of Leuven = Katholieke Universiteit Leuven (KU Leuven),

Laboratório de Biologia Molecular de Flavivírus [Rio de Janeiro] ; Instituto Oswaldo Cruz = Oswaldo Cruz Institute [Rio de Janeiro] (IOC) ; Fundação Oswaldo Cruz / Oswaldo Cruz Foundation (FIOCRUZ) ; Pasteur Network (Réseau Internat

2018

Overview

The yellow fever virus (YFV) epidemic in Brazil is the largest in decades. The recent discovery of YFV in Brazilian Aedes species mosquitos highlights a need to monitor the risk of reestablishment of urban YFV transmission in the Americas. We use a suite of epidemiological, spatial, and genomic approaches to characterize YFV transmission. We show that the age and sex distribution of human cases is characteristic of sylvatic transmission. Analysis of YFV cases combined with genomes generated locally reveals an early phase of sylvatic YFV transmission and spatial expansion toward previously YFV-free areas, followed by a rise in viral spillover to humans in late 2016. Our results establish a framework for monitoring YFV transmission in real time that will contribute to a global strategy to eliminate future YFV epidemics.

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Publisher

American Association for the Advancement of Science (AAAS),CCSD,The American Association for the Advancement of Science

Subject

/ Animals

/ Brazil - epidemiology