Journal Article

Embodied bidirectional simulation of a spiking cortico-basal ganglia-cerebellar-thalamic brain model and a mouse musculoskeletal body model distributed across computers including the supercomputer Fugaku

Albanese, Ugo, Kuniyoshi, Yusuke, Hirayama, Tomoya, Feldotto, Benedikt, Knoll, Alois C., Gutierrez, Carlos Enrique, Morin, Fabrice O., Doya, Kenji, Yamada, Taiki, Igarashi, Jun, Kuriyama, Rin, Omura, Shu, Sun, Zhe, Yamazaki, Tadashi

2023

Overview

Embodied simulation with a digital brain model and a realistic musculoskeletal body model provides a means to understand animal behavior and behavioral change. Such simulation can be too large and complex to conduct on a single computer, and so distributed simulation across multiple computers over the Internet is necessary. In this study, we report our joint effort on developing a spiking brain model and a mouse body model, connecting over the Internet, and conducting bidirectional simulation while synchronizing them. Specifically, the brain model consisted of multiple regions including secondary motor cortex, primary motor and somatosensory cortices, basal ganglia, cerebellum and thalamus, whereas the mouse body model, provided by the Neurorobotics Platform of the Human Brain Project, had a movable forelimb with three joints and six antagonistic muscles to act in a virtual environment. Those were simulated in a distributed manner across multiple computers including the supercomputer Fugaku, which is the flagship supercomputer in Japan, while communicating via Robot Operating System (ROS). To incorporate models written in C/C++ in the distributed simulation, we developed a C++ version of the rosbridge library from scratch, which has been released under an open source license. These results provide necessary tools for distributed embodied simulation, and demonstrate its possibility and usefulness toward understanding animal behavior and behavioral change.

• Publisher: Frontiers Media S.A
• Subject: distributed simulation / Fugaku / musculoskeletal model / Neurorobotics Platform / Neuroscience / ROS / spiking neural networks