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A gene expression atlas for different kinds of stress in the mouse brain
by
Oliverio, Alberto
, Mannironi Cecilia
, Flati Tiziano
, Mele, Andrea
, Castrignanò Tiziana
, Gioiosa Silvia
, Chillemi Giovanni
, Rinaldi Arianna
in
Adaptation
/ Bioinformatics
/ Computational neuroscience
/ Gene expression
/ Homeostasis
/ Stress response
/ Transcription
2020
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A gene expression atlas for different kinds of stress in the mouse brain
by
Oliverio, Alberto
, Mannironi Cecilia
, Flati Tiziano
, Mele, Andrea
, Castrignanò Tiziana
, Gioiosa Silvia
, Chillemi Giovanni
, Rinaldi Arianna
in
Adaptation
/ Bioinformatics
/ Computational neuroscience
/ Gene expression
/ Homeostasis
/ Stress response
/ Transcription
2020
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While trying to remove the title from your shelf something went wrong :( Kindly try again later!
Do you wish to request the book?
A gene expression atlas for different kinds of stress in the mouse brain
by
Oliverio, Alberto
, Mannironi Cecilia
, Flati Tiziano
, Mele, Andrea
, Castrignanò Tiziana
, Gioiosa Silvia
, Chillemi Giovanni
, Rinaldi Arianna
in
Adaptation
/ Bioinformatics
/ Computational neuroscience
/ Gene expression
/ Homeostasis
/ Stress response
/ Transcription
2020
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A gene expression atlas for different kinds of stress in the mouse brain
Journal Article
A gene expression atlas for different kinds of stress in the mouse brain
2020
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Overview
Stressful experiences are part of everyday life and animals have evolved physiological and behavioral responses aimed at coping with stress and maintaining homeostasis. However, repeated or intense stress can induce maladaptive reactions leading to behavioral disorders. Adaptations in the brain, mediated by changes in gene expression, have a crucial role in the stress response. Recent years have seen a tremendous increase in studies on the transcriptional effects of stress. The input raw data are freely available from public repositories and represent a wealth of information for further global and integrative retrospective analyses. We downloaded from the Sequence Read Archive 751 samples (SRA-experiments), from 18 independent BioProjects studying the effects of different stressors on the brain transcriptome in mice. We performed a massive bioinformatics re-analysis applying a single, standardized pipeline for computing differential gene expression. This data mining allowed the identification of novel candidate stress-related genes and specific signatures associated with different stress conditions. The large amount of computational results produced was systematized in the interactive “Stress Mice Portal”.
Publisher
Nature Publishing Group
Subject
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