Journal Article

Sequence and genetic map of Meloidogyne hapla: A compact nematode genome for plant parasitism

Liu, Qingli, Sosinski, Bryon R, Bird, David M, Scholl, Elizabeth, Rokhsar, Dan S, Houfek, T.D, Schaffer, Reenah, Diener, Steve, Gajan, Jim, Mitros, Therese, Opperman, Charles H, Cromer, John, Graham, Steve, Burke, Mark, Thomas, Varghese P, Cohn, Jonathan, Schaff, Jennifer, Williamson, Valerie M, Windham, Eric

2008

Overview

We have established Meloidogyne hapla as a tractable model plant-parasitic nematode amenable to forward and reverse genetics, and we present a complete genome sequence. At 54 Mbp, M. hapla represents not only the smallest nematode genome yet completed, but also the smallest metazoan, and defines a platform to elucidate mechanisms of parasitism by what is the largest uncontrolled group of plant pathogens worldwide. The M. hapla genome encodes significantly fewer genes than does the free-living nematode Caenorhabditis elegans (most notably through a reduction of odorant receptors and other gene families), yet it has acquired horizontally from other kingdoms numerous genes suspected to be involved in adaptations to parasitism. In some cases, amplification and tandem duplication have occurred with genes suspected of being acquired horizontally and involved in parasitism of plants. Although M. hapla and C. elegans diverged >500 million years ago, many developmental and biochemical pathways, including those for dauer formation and RNAi, are conserved. Although overall genome organization is not conserved, there are areas of microsynteny that may suggest a primary biological function in nematodes for those genes in these areas. This sequence and map represent a wealth of biological information on both the nature of nematode parasitism of plants and its evolution.

• Publisher: National Academy of Sciences,National Acad Sciences
• Subject: Adaptations / Animals / Base Sequence / Biological Sciences / Caenorhabditis elegans / Caenorhabditis elegans - genetics / Chromosome Mapping / Evolution / Evolution, Molecular / Evolutionary genetics / Gene Duplication / Gene Transfer, Horizontal / Genes / Genetic mapping / Genetics / genome / Genome, Helminth / Genomes / Genomics / Host-Parasite Interactions - genetics / Meloidogyne hapla / Metazoa / Molecular Sequence Data / Multigene Family / Nematoda / Nematodes / Nucleotide sequence / nucleotide sequences / Odorant receptors / Operon / Parasites / Parasitism / Parasitology / Pathogens / Phylogeny / Plant parasitic nematodes / Plant pathology / Plants / Plants - parasitology / RNA-mediated interference / Sequencing / Synteny / Tylenchoidea - genetics