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大鼠软骨生成过程表达的小分子 RNA 生物信息学分析
by
邵世滨 闵自信 郭源旭 王权成 孙梦瑶 韩燕 孙健
in
Solexa测序
/ sRNA
/ 大鼠
/ 生物信息学
/ 软骨生成
2015
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大鼠软骨生成过程表达的小分子 RNA 生物信息学分析
by
邵世滨 闵自信 郭源旭 王权成 孙梦瑶 韩燕 孙健
in
Solexa测序
/ sRNA
/ 大鼠
/ 生物信息学
/ 软骨生成
2015
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Journal Article
大鼠软骨生成过程表达的小分子 RNA 生物信息学分析
2015
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目的:分析大鼠软骨形成过程中小分子 RNA(sRNA)表达谱变化及其基因功能,探讨软骨细胞增殖与分化的机制。方法取新生、断乳、性成熟3个时间节点的雌性 SD 大鼠股骨头软骨构建 sRNA 文库,Solexa 测序平台鉴定软骨组织全部 sRNA 序列表达,所得的全部清洁序列与 SD 大鼠基因组信息比对,并做生物信息学分析。结果3个文库筛选出与基因组序列完全匹配序列,分别对应着217921条(41.23%)、196650条(38.74%)、245436条(41.54%)unique sRNA 序列。长度为20~24 nt 的 sRNA 占比:d 0为71.94%、d 21为72.85%、d 42为86.39%;其中,长度为22 nt的 sRNA 约占清洁序列的一半。文库序列分布特征,符合高质量 sRNA 文库的特征。超过总数62%的清洁序列来自于成熟 miRNA 序列,但在3个文库中的占比却仅仅只有0.69%、0.78%和0.63%。约60%的unique sRNA 序列无法与 miRBase 20.0和 Rfam9.1匹配。结论3个 sRNA 文库的 miRNA 这种分布模式,可能暗示着有功能不同或者来源各异的 miRNA,参与了对骨骼发育和骨形成关键阶段软骨细胞增殖与分化的调控。
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