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RNA-guided complex from a bacterial immune system enhances target recognition through seed sequence interactions
by
van Duijn, Esther
, Westphal, Wiebke
, Wiedenheft, Blake
, Heck, Albert
, Dickman, Mark
, Waghmare, Sakharam
, Bultema, Jelle
, Barendregt, Arjan
, Zhou, Kaihong
, Doudna, Jennifer A
, Boekema, Egbert
in
adaptive immunity
/ Adaptive Immunity - genetics
/ Adaptive Immunity - immunology
/ Architecture
/ Bacteria
/ Bacterial Proteins - genetics
/ Bacterial Proteins - metabolism
/ Bacteriophages
/ Base Sequence
/ Biological Sciences
/ Conserved sequence
/ DNA
/ E coli
/ Electron microscopy
/ Endoribonucleases - genetics
/ Endoribonucleases - metabolism
/ Escherichia coli
/ Escherichia coli - genetics
/ Escherichia coli - immunology
/ Genes
/ hybridization
/ Immune system
/ loci
/ Macromolecular Substances - chemistry
/ Macromolecular Substances - metabolism
/ Mass spectroscopy
/ Microorganisms
/ Microscopy
/ Models, Molecular
/ Molecular Sequence Data
/ Nucleic acids
/ Nucleotide sequence
/ Phages
/ Plasmids
/ Prokaryotes
/ prokaryotic cells
/ Proteins
/ Pseudomonas aeruginosa
/ Pseudomonas aeruginosa - genetics
/ Pseudomonas aeruginosa - immunology
/ Ribonucleic acid
/ Ribonucleoproteins
/ RNA
/ RNA - genetics
/ RNA - metabolism
/ Seeds
/ Spacer
/ Stoichiometry
/ Structural analysis
/ Target recognition
/ X-radiation
/ X-ray scattering
/ Yersinia
2011
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RNA-guided complex from a bacterial immune system enhances target recognition through seed sequence interactions
by
van Duijn, Esther
, Westphal, Wiebke
, Wiedenheft, Blake
, Heck, Albert
, Dickman, Mark
, Waghmare, Sakharam
, Bultema, Jelle
, Barendregt, Arjan
, Zhou, Kaihong
, Doudna, Jennifer A
, Boekema, Egbert
in
adaptive immunity
/ Adaptive Immunity - genetics
/ Adaptive Immunity - immunology
/ Architecture
/ Bacteria
/ Bacterial Proteins - genetics
/ Bacterial Proteins - metabolism
/ Bacteriophages
/ Base Sequence
/ Biological Sciences
/ Conserved sequence
/ DNA
/ E coli
/ Electron microscopy
/ Endoribonucleases - genetics
/ Endoribonucleases - metabolism
/ Escherichia coli
/ Escherichia coli - genetics
/ Escherichia coli - immunology
/ Genes
/ hybridization
/ Immune system
/ loci
/ Macromolecular Substances - chemistry
/ Macromolecular Substances - metabolism
/ Mass spectroscopy
/ Microorganisms
/ Microscopy
/ Models, Molecular
/ Molecular Sequence Data
/ Nucleic acids
/ Nucleotide sequence
/ Phages
/ Plasmids
/ Prokaryotes
/ prokaryotic cells
/ Proteins
/ Pseudomonas aeruginosa
/ Pseudomonas aeruginosa - genetics
/ Pseudomonas aeruginosa - immunology
/ Ribonucleic acid
/ Ribonucleoproteins
/ RNA
/ RNA - genetics
/ RNA - metabolism
/ Seeds
/ Spacer
/ Stoichiometry
/ Structural analysis
/ Target recognition
/ X-radiation
/ X-ray scattering
/ Yersinia
2011
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RNA-guided complex from a bacterial immune system enhances target recognition through seed sequence interactions
by
van Duijn, Esther
, Westphal, Wiebke
, Wiedenheft, Blake
, Heck, Albert
, Dickman, Mark
, Waghmare, Sakharam
, Bultema, Jelle
, Barendregt, Arjan
, Zhou, Kaihong
, Doudna, Jennifer A
, Boekema, Egbert
in
adaptive immunity
/ Adaptive Immunity - genetics
/ Adaptive Immunity - immunology
/ Architecture
/ Bacteria
/ Bacterial Proteins - genetics
/ Bacterial Proteins - metabolism
/ Bacteriophages
/ Base Sequence
/ Biological Sciences
/ Conserved sequence
/ DNA
/ E coli
/ Electron microscopy
/ Endoribonucleases - genetics
/ Endoribonucleases - metabolism
/ Escherichia coli
/ Escherichia coli - genetics
/ Escherichia coli - immunology
/ Genes
/ hybridization
/ Immune system
/ loci
/ Macromolecular Substances - chemistry
/ Macromolecular Substances - metabolism
/ Mass spectroscopy
/ Microorganisms
/ Microscopy
/ Models, Molecular
/ Molecular Sequence Data
/ Nucleic acids
/ Nucleotide sequence
/ Phages
/ Plasmids
/ Prokaryotes
/ prokaryotic cells
/ Proteins
/ Pseudomonas aeruginosa
/ Pseudomonas aeruginosa - genetics
/ Pseudomonas aeruginosa - immunology
/ Ribonucleic acid
/ Ribonucleoproteins
/ RNA
/ RNA - genetics
/ RNA - metabolism
/ Seeds
/ Spacer
/ Stoichiometry
/ Structural analysis
/ Target recognition
/ X-radiation
/ X-ray scattering
/ Yersinia
2011
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RNA-guided complex from a bacterial immune system enhances target recognition through seed sequence interactions
Journal Article
RNA-guided complex from a bacterial immune system enhances target recognition through seed sequence interactions
2011
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Overview
Prokaryotes have evolved multiple versions of an RNA-guided adaptive immune system that targets foreign nucleic acids. In each case, transcripts derived from clustered regularly interspaced short palindromic repeats (CRISPRs) are thought to selectively target invading phage and plasmids in a sequence-specific process involving a variable cassette of CRISPR-associated (cas) genes. The CRISPR locus in Pseudomonas aeruginosa (PA14) includes four cas genes that are unique to and conserved in microorganisms harboring the Csy-type (CRISPR system yersinia) immune system. Here we show that the Csy proteins (Csy1-4) assemble into a 350 kDa ribonucleoprotein complex that facilitates target recognition by enhancing sequence-specific hybridization between the CRISPR RNA and complementary target sequences. Target recognition is enthalpically driven and localized to a \"seed sequence\" at the 5' end of the CRISPR RNA spacer. Structural analysis of the complex by small-angle X-ray scattering and single particle electron microscopy reveals a crescent-shaped particle that bears striking resemblance to the architecture of a large CRISPR-associated complex from Escherichia coli, termed Cascade. Although similarity between these two complexes is not evident at the sequence level, their unequal subunit stoichiometry and quaternary architecture reveal conserved structural features that may be common among diverse CRISPR-mediated defense systems.
Publisher
National Academy of Sciences,National Academy of Sciences Issue,National Acad Sciences
Subject
/ Adaptive Immunity - genetics
/ Adaptive Immunity - immunology
/ Bacteria
/ Bacterial Proteins - genetics
/ Bacterial Proteins - metabolism
/ DNA
/ E coli
/ Endoribonucleases - genetics
/ Endoribonucleases - metabolism
/ Escherichia coli - immunology
/ Genes
/ loci
/ Macromolecular Substances - chemistry
/ Macromolecular Substances - metabolism
/ Phages
/ Plasmids
/ Proteins
/ Pseudomonas aeruginosa - genetics
/ Pseudomonas aeruginosa - immunology
/ RNA
/ Seeds
/ Spacer
/ Yersinia
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