Journal Article

Prediction and analysis of anti-aging peptides using data augmentation and machine learning algorithms

Wang, Mingyang, Pan, Yuanyuan, Zhang, Zhiyuan, Chen, Guozhong, Chen, Yuanyuan, Li, Erguang, Wang, Shihao

2025

Overview

Background For most species, Aging is an inevitable biological process that poses significant challenges to global healthcare due to age-related diseases. Recent advances in peptide therapy have highlighted anti-aging peptides (AAPs) as a promising therapeutic strategy, owing to their low immunogenicity and ease of synthesis. However, the lack of computational tools for AAP identification has hindered systematic research in this field. Results In this study, we provided a benchmark dataset of anti-aging peptides (AAPs) based on their annotated biological functions and AgingBase database. Subsequently, we proposed three novel predictive models, including 1) Antiaging-FL, which integrates feature representation learning with machine learning algorithms; 2) ESM_GAN, which utilizes a generative adversarial network (GAN) for data augmentation to enhance prediction robustness; and 3) ESM_CNN, which combines a data augmentation strategy based on conservative amino acid substitutions with a convolutional neural network (CNN) architecture for improved feature extraction. Comprehensive evaluations demonstrated that all three models achieved high predictive performance. Specifically, Antiaging-FL achieved an AUC of 1.00 on the AAP400 dataset and 0.99 on an independent test set, while ESM_GAN yielded AUCs of 0.99 and 0.95, and ESM_CNN obtained AUCs of 0.96 and 0.94, respectively. Conclusions Our study presents three high-performance models for AAP prediction, accelerating the discovery of novel anti-aging peptides. These models not only provide a valuable resource for researchers but also offer insights into the functional mechanisms of AAPs, paving the way for targeted drug development in aging-related therapeutics.

• Publisher: BioMed Central,BioMed Central Ltd,Springer Nature B.V,BMC
• Subject: Age related diseases / Aging / Aging - drug effects / Algorithms / Amino acids / Anti-aging peptide / Artificial neural networks / Benchmarks / Biological activity / Biomedical and Life Sciences / Data augmentation / Data mining / Datasets / Deep learning / Drug development / Feature extraction / Generative adversarial networks / Global health / Health aspects / Humans / Immunogenicity / Learning algorithms / Life Sciences / Machine Learning / Neural networks / Neural Networks, Computer / Peptides / Peptides - chemistry / Peptides - pharmacology / Prediction models / Software / Support vector machines