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Fast and efficient generation of knock-in human organoids using homology-independent CRISPR–Cas9 precision genome editing
by
Hendriks Delilah
, Beumer Joep
, Joore Indi
, Kok Rutger
, Chuva de Sousa Lopes Susana
, Zheng Xuan
, van Zon Jeroen
, Artegiani Benedetta
, Clevers Hans
, Tans Sander
in
Cell membranes
/ Cloning
/ CRISPR
/ Deoxyribonucleic acid
/ DNA
/ E-cadherin
/ Editing
/ Gene sequencing
/ Genome editing
/ Genomes
/ Homology
/ Integration
/ Intestine
/ Non-homologous end joining
/ Nucleotide sequence
/ Organoids
/ p53 Protein
/ Ploidy
/ Tubulin
2020
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Fast and efficient generation of knock-in human organoids using homology-independent CRISPR–Cas9 precision genome editing
by
Hendriks Delilah
, Beumer Joep
, Joore Indi
, Kok Rutger
, Chuva de Sousa Lopes Susana
, Zheng Xuan
, van Zon Jeroen
, Artegiani Benedetta
, Clevers Hans
, Tans Sander
in
Cell membranes
/ Cloning
/ CRISPR
/ Deoxyribonucleic acid
/ DNA
/ E-cadherin
/ Editing
/ Gene sequencing
/ Genome editing
/ Genomes
/ Homology
/ Integration
/ Intestine
/ Non-homologous end joining
/ Nucleotide sequence
/ Organoids
/ p53 Protein
/ Ploidy
/ Tubulin
2020
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Fast and efficient generation of knock-in human organoids using homology-independent CRISPR–Cas9 precision genome editing
by
Hendriks Delilah
, Beumer Joep
, Joore Indi
, Kok Rutger
, Chuva de Sousa Lopes Susana
, Zheng Xuan
, van Zon Jeroen
, Artegiani Benedetta
, Clevers Hans
, Tans Sander
in
Cell membranes
/ Cloning
/ CRISPR
/ Deoxyribonucleic acid
/ DNA
/ E-cadherin
/ Editing
/ Gene sequencing
/ Genome editing
/ Genomes
/ Homology
/ Integration
/ Intestine
/ Non-homologous end joining
/ Nucleotide sequence
/ Organoids
/ p53 Protein
/ Ploidy
/ Tubulin
2020
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Fast and efficient generation of knock-in human organoids using homology-independent CRISPR–Cas9 precision genome editing
Journal Article
Fast and efficient generation of knock-in human organoids using homology-independent CRISPR–Cas9 precision genome editing
2020
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Overview
CRISPR–Cas9 technology has revolutionized genome editing and is applicable to the organoid field. However, precise integration of exogenous DNA sequences into human organoids is lacking robust knock-in approaches. Here, we describe CRISPR–Cas9-mediated homology-independent organoid transgenesis (CRISPR–HOT), which enables efficient generation of knock-in human organoids representing different tissues. CRISPR–HOT avoids extensive cloning and outperforms homology directed repair (HDR) in achieving precise integration of exogenous DNA sequences into desired loci, without the necessity to inactivate TP53 in untransformed cells, which was previously used to increase HDR-mediated knock-in. CRISPR–HOT was used to fluorescently tag and visualize subcellular structural molecules and to generate reporter lines for rare intestinal cell types. A double reporter—in which the mitotic spindle was labelled by endogenously tagged tubulin and the cell membrane by endogenously tagged E-cadherin—uncovered modes of human hepatocyte division. Combining tubulin tagging with TP53 knock-out revealed that TP53 is involved in controlling hepatocyte ploidy and mitotic spindle fidelity. CRISPR–HOT simplifies genome editing in human organoids.Artegiani, Hendriks et al. describe a CRISPR–Cas9-based method to efficiently generate human knock-in organoids using non-homologous end joining to study rare intestinal cell types and human hepatocyte division.
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