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Genomic reproducibility in the bioinformatics era
by
Baykal, Pelin Icer
, Mangul, Serghei
, Łabaj, Paweł Piotr
, Markowetz, Florian
, Stekhoven, Daniel J.
, Beerenwinkel, Niko
, Schriml, Lynn M.
in
Algorithms
/ Animal Genetics and Genomics
/ Bioinformatics
/ bioinformatics tools
/ Biomedical and Life Sciences
/ biomedical research
/ Computational Biology - methods
/ Datasets
/ Evolutionary Biology
/ genome
/ Genomics
/ Genomics - methods
/ Human Genetics
/ Humans
/ Laboratories
/ Life Sciences
/ Measurement techniques
/ Medical research
/ Microbial Genetics and Genomics
/ Performance evaluation
/ Plant Genetics and Genomics
/ Reproducibility
/ Reproducibility of Results
/ Review
/ Reviews
/ synthetic replicates
/ technical replicates
2024
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Genomic reproducibility in the bioinformatics era
by
Baykal, Pelin Icer
, Mangul, Serghei
, Łabaj, Paweł Piotr
, Markowetz, Florian
, Stekhoven, Daniel J.
, Beerenwinkel, Niko
, Schriml, Lynn M.
in
Algorithms
/ Animal Genetics and Genomics
/ Bioinformatics
/ bioinformatics tools
/ Biomedical and Life Sciences
/ biomedical research
/ Computational Biology - methods
/ Datasets
/ Evolutionary Biology
/ genome
/ Genomics
/ Genomics - methods
/ Human Genetics
/ Humans
/ Laboratories
/ Life Sciences
/ Measurement techniques
/ Medical research
/ Microbial Genetics and Genomics
/ Performance evaluation
/ Plant Genetics and Genomics
/ Reproducibility
/ Reproducibility of Results
/ Review
/ Reviews
/ synthetic replicates
/ technical replicates
2024
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Do you wish to request the book?
Genomic reproducibility in the bioinformatics era
by
Baykal, Pelin Icer
, Mangul, Serghei
, Łabaj, Paweł Piotr
, Markowetz, Florian
, Stekhoven, Daniel J.
, Beerenwinkel, Niko
, Schriml, Lynn M.
in
Algorithms
/ Animal Genetics and Genomics
/ Bioinformatics
/ bioinformatics tools
/ Biomedical and Life Sciences
/ biomedical research
/ Computational Biology - methods
/ Datasets
/ Evolutionary Biology
/ genome
/ Genomics
/ Genomics - methods
/ Human Genetics
/ Humans
/ Laboratories
/ Life Sciences
/ Measurement techniques
/ Medical research
/ Microbial Genetics and Genomics
/ Performance evaluation
/ Plant Genetics and Genomics
/ Reproducibility
/ Reproducibility of Results
/ Review
/ Reviews
/ synthetic replicates
/ technical replicates
2024
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Journal Article
Genomic reproducibility in the bioinformatics era
2024
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Overview
In biomedical research, validating a scientific discovery hinges on the reproducibility of its experimental results. However, in genomics, the definition and implementation of reproducibility remain imprecise. We argue that genomic reproducibility, defined as the ability of bioinformatics tools to maintain consistent results across technical replicates, is essential for advancing scientific knowledge and medical applications. Initially, we examine different interpretations of reproducibility in genomics to clarify terms. Subsequently, we discuss the impact of bioinformatics tools on genomic reproducibility and explore methods for evaluating these tools regarding their effectiveness in ensuring genomic reproducibility. Finally, we recommend best practices to improve genomic reproducibility.
Publisher
BioMed Central,Springer Nature B.V,BMC
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