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In vivo visualization of the i-motif DNA secondary structure in the Bombyx mori testis
by
Chen, Shuna
, Zhang, Xian
, Wang, Jian
, Li, Sheng
, Peng, Yuling
, Feng, Qili
, Yu, Guoxing
, Tang, Wenhuan
, Song, Qisheng
, Niu, Kangkang
, Jin, Ying
, Deng, Huimin
in
Animal Genetics and Genomics
/ Animals
/ Antibodies
/ Biomedical and Life Sciences
/ Bombyx - genetics
/ Bombyx mori
/ Cell Biology
/ Cell cycle
/ Chromosome
/ Chromosomes
/ Cytosine - chemistry
/ Deoxyribonucleic acid
/ DNA
/ DNA - chemistry
/ DNA - genetics
/ DNA secondary structure
/ DNA structure
/ EDTA
/ Epigenesis, Genetic
/ Epigenetic inheritance
/ Epigenetic regulation
/ Fluorescent antibody technique
/ Gene Expression
/ Gene Function
/ Genes
/ Genomes
/ Genomics
/ Human Genetics
/ i-motif
/ In vivo detection
/ Insect Proteins - metabolism
/ Life Sciences
/ Male
/ Nucleotide Motifs
/ Plant Genetics and Genomics
/ Porphyrins
/ Protein structure
/ Proteins
/ Secondary structure
/ Spectrum analysis
/ Structure (Literature)
/ Testis - metabolism
/ Time
/ Transcription (Genetics)
/ Transcription factors
/ Transcription Factors - metabolism
/ Visualization
2020
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In vivo visualization of the i-motif DNA secondary structure in the Bombyx mori testis
by
Chen, Shuna
, Zhang, Xian
, Wang, Jian
, Li, Sheng
, Peng, Yuling
, Feng, Qili
, Yu, Guoxing
, Tang, Wenhuan
, Song, Qisheng
, Niu, Kangkang
, Jin, Ying
, Deng, Huimin
in
Animal Genetics and Genomics
/ Animals
/ Antibodies
/ Biomedical and Life Sciences
/ Bombyx - genetics
/ Bombyx mori
/ Cell Biology
/ Cell cycle
/ Chromosome
/ Chromosomes
/ Cytosine - chemistry
/ Deoxyribonucleic acid
/ DNA
/ DNA - chemistry
/ DNA - genetics
/ DNA secondary structure
/ DNA structure
/ EDTA
/ Epigenesis, Genetic
/ Epigenetic inheritance
/ Epigenetic regulation
/ Fluorescent antibody technique
/ Gene Expression
/ Gene Function
/ Genes
/ Genomes
/ Genomics
/ Human Genetics
/ i-motif
/ In vivo detection
/ Insect Proteins - metabolism
/ Life Sciences
/ Male
/ Nucleotide Motifs
/ Plant Genetics and Genomics
/ Porphyrins
/ Protein structure
/ Proteins
/ Secondary structure
/ Spectrum analysis
/ Structure (Literature)
/ Testis - metabolism
/ Time
/ Transcription (Genetics)
/ Transcription factors
/ Transcription Factors - metabolism
/ Visualization
2020
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In vivo visualization of the i-motif DNA secondary structure in the Bombyx mori testis
by
Chen, Shuna
, Zhang, Xian
, Wang, Jian
, Li, Sheng
, Peng, Yuling
, Feng, Qili
, Yu, Guoxing
, Tang, Wenhuan
, Song, Qisheng
, Niu, Kangkang
, Jin, Ying
, Deng, Huimin
in
Animal Genetics and Genomics
/ Animals
/ Antibodies
/ Biomedical and Life Sciences
/ Bombyx - genetics
/ Bombyx mori
/ Cell Biology
/ Cell cycle
/ Chromosome
/ Chromosomes
/ Cytosine - chemistry
/ Deoxyribonucleic acid
/ DNA
/ DNA - chemistry
/ DNA - genetics
/ DNA secondary structure
/ DNA structure
/ EDTA
/ Epigenesis, Genetic
/ Epigenetic inheritance
/ Epigenetic regulation
/ Fluorescent antibody technique
/ Gene Expression
/ Gene Function
/ Genes
/ Genomes
/ Genomics
/ Human Genetics
/ i-motif
/ In vivo detection
/ Insect Proteins - metabolism
/ Life Sciences
/ Male
/ Nucleotide Motifs
/ Plant Genetics and Genomics
/ Porphyrins
/ Protein structure
/ Proteins
/ Secondary structure
/ Spectrum analysis
/ Structure (Literature)
/ Testis - metabolism
/ Time
/ Transcription (Genetics)
/ Transcription factors
/ Transcription Factors - metabolism
/ Visualization
2020
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In vivo visualization of the i-motif DNA secondary structure in the Bombyx mori testis
Journal Article
In vivo visualization of the i-motif DNA secondary structure in the Bombyx mori testis
2020
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Overview
Background
A large number of in vitro experiments have confirmed that DNA molecules can form i-motif advanced structure when multiple cytosines exist in the sequence. However, whether these structures are present in vivo environment still lacks sufficient experimental evidence.
Results
In this paper, we report the in vivo visualization of i-motif structures in the nuclei and chromosomes of the testis of the invertebrate
Bombyx mori
using immunofluorescence staining with an antibody specifically recognizing the endogenous transcription factor BmILF, which binds i-motif structure with high specificity. The number of i-motif structures observed in the genome increased when the pH was changed from basic to acidic and decreased under treatment with an i-motif inhibitor, the porphyrin compound TMPyP4. The pH change affected the transcription of genes that contain i-motif sequences. Moreover, there were more i-motif structures observed in the testis cells in interphase than in any other cell cycle stage.
Conclusions
In this study, the i-motif structures in invertebrates were detected for the first time at the cell and organ levels. The formation of the structures depended on cell cycle and pH and affected gene expression.
Publisher
BioMed Central,BioMed Central Ltd,Springer Nature B.V,BMC
Subject
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