Journal Article

Evolution of specifier proteins in glucosinolate-containing plants

Burow, Meike, Kuchernig, Jennifer C, Wittstock, Ute

2012

Overview

Background The glucosinolate-myrosinase system is an activated chemical defense system found in plants of the Brassicales order. Glucosinolates are stored separately from their hydrolytic enzymes, the myrosinases, in plant tissues. Upon tissue damage, e.g. by herbivory, glucosinolates and myrosinases get mixed and glucosinolates are broken down to an array of biologically active compounds of which isothiocyanates are toxic to a wide range of organisms. Specifier proteins occur in some, but not all glucosinolate-containing plants and promote the formation of biologically active non-isothiocyanate products upon myrosinase-catalyzed glucosinolate breakdown. Results Based on a phytochemical screening among representatives of the Brassicales order, we selected candidate species for identification of specifier protein cDNAs. We identified ten specifier proteins from a range of species of the Brassicaceae and assigned each of them to one of the three specifier protein types (NSP, nitrile-specifier protein, ESP, epithiospecifier protein, TFP, thiocyanate-forming protein) after heterologous expression in Escherichia coli . Together with nine known specifier proteins and three putative specifier proteins found in databases, we subjected the newly identified specifier proteins to phylogenetic analyses. Specifier proteins formed three major clusters, named AtNSP5-cluster, AtNSP1-cluster, and ESP/TFP cluster. Within the ESP/TFP cluster, specifier proteins grouped according to the Brassicaceae lineage they were identified from. Non-synonymous vs. synonymous substitution rate ratios suggested purifying selection to act on specifier protein genes. Conclusions Among specifier proteins, NSPs represent the ancestral activity. The data support a monophyletic origin of ESPs from NSPs. The split between NSPs and ESPs/TFPs happened before the radiation of the core Brassicaceae. Future analyses have to show if TFP activity evolved from ESPs at least twice independently in different Brassicaceae lineages as suggested by the phylogeny. The ability to form non-isothiocyanate products by specifier protein activity may provide plants with a selective advantage. The evolution of specifier proteins in the Brassicaceae demonstrates the plasticity of secondary metabolism within an activated plant defense system.

• Publisher: BioMed Central,BioMed Central Ltd,BMC
• Subject: Amino acids / Animal Systematics/Taxonomy/Biogeography / Biological Evolution / Biomedical and Life Sciences / Brassicaceae - chemistry / Brassicaceae - genetics / Candidate species / Chemical defense / Chemical diversity / DNA, Complementary - genetics / E coli / Entomology / Enzymes / Evolution / Evolutionary Biology / Genetics / Genetics and Population Dynamics / Genome evolution and evolutionary systems biology / Glucosinolate breakdown / Glucosinolates - biosynthesis / Glycoside Hydrolases - genetics / Herbivory / Life Sciences / Microbiology / Phylogenetic analysis / Phylogeny / Physiological aspects / Plant proteins / Plant Proteins - genetics / Plant tissues / Proteins / Research Article / Secondary metabolism / Sequence Alignment / Sequence Analysis, Protein / Specifier proteins