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CUT&RUNTools: a flexible pipeline for CUT&RUN processing and footprint analysis
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Journal Article
CUT&RUNTools: a flexible pipeline for CUT&RUN processing and footprint analysis
2019
Overview
We introduce CUT&RUNTools as a flexible, general pipeline for facilitating the identification of chromatin-associated protein binding and genomic footprinting analysis from antibody-targeted CUT&RUN primary cleavage data. CUT&RUNTools extracts endonuclease cut site information from sequences of short-read fragments and produces single-locus binding estimates, aggregate motif footprints, and informative visualizations to support the high-resolution mapping capability of CUT&RUN. CUT&RUNTools is available at
https://bitbucket.org/qzhudfci/cutruntools/
.
Publisher
BioMed Central,Springer Nature B.V
