Journal Article

SAR and QSAR modeling of a large collection of LD50 rat acute oral toxicity data

Gadaleta, Domenico, Benfenati, Emilio, Mansouri, Kamel, Lavado, Giovanna J., Karmaus, Agnes L., Kleinstreuer, Nicole C., Vuković, Kristijan, Roncaglioni, Alessandra, Toma, Cosimo

2019

Overview

The median lethal dose for rodent oral acute toxicity (LD50) is a standard piece of information required to categorize chemicals in terms of the potential hazard posed to human health after acute exposure. The exclusive use of in vivo testing is limited by the time and costs required for performing experiments and by the need to sacrifice a number of animals. (Quantitative) structure–activity relationships [(Q)SAR] proved a valid alternative to reduce and assist in vivo assays for assessing acute toxicological hazard. In the framework of a new international collaborative project, the NTP Interagency Center for the Evaluation of Alternative Toxicological Methods and the U.S. Environmental Protection Agency’s National Center for Computational Toxicology compiled a large database of rat acute oral LD50 data, with the aim of supporting the development of new computational models for predicting five regulatory relevant acute toxicity endpoints. In this article, a series of regression and classification computational models were developed by employing different statistical and knowledge-based methodologies. External validation was performed to demonstrate the real-life predictability of models. Integrated modeling was then applied to improve performance of single models. Statistical results confirmed the relevance of developed models in regulatory frameworks, and confirmed the effectiveness of integrated modeling. The best integrated strategies reached RMSEs lower than 0.50 and the best classification models reached balanced accuracies over 0.70 for multi-class and over 0.80 for binary endpoints. Computed predictions will be hosted on the EPA’s Chemistry Dashboard and made freely available to the scientific community.

• Publisher: Springer International Publishing,BioMed Central Ltd,Springer Nature B.V,BMC
• Subject: (Q)SAR / Acute rat oral toxicity / Acute toxicity / Animal experimentation / Biochemical toxicology / Biocompatibility / Biomedical materials / Chemistry / Chemistry and Materials Science / Classification / Computational biology / Computational Biology/Bioinformatics / Computational toxicology / Computer applications / Computer Applications in Chemistry / Dashboards / Documentation and Information in Chemistry / Environmental protection / Health hazards / In vivo methods and tests / Integrated modeling / Laboratory rodents / LD50 / Lethal dose / Mathematical models / Methods / Model accuracy / Organic chemistry / Performance enhancement / Physiological aspects / Predictions / Regression analysis / Research Article / Statistical analysis / Structure-activity relationships / Structure-activity relationships (Biochemistry) / Theoretical and Computational Chemistry / Toxicity / Toxicology