Journal Article

The Release Rate of Environmental DNA from Juvenile and Adult Fish

Minamoto, Toshifumi, Nakamura, Keisuke, Maruyama, Atsushi, Yamanaka, Hiroki, Kondoh, Michio

2014

Overview

The environmental DNA (eDNA) technique is expected to become a powerful, non-invasive tool for estimating the distribution and biomass of organisms. This technique was recently shown to be applicable to aquatic vertebrates by collecting extraorganismal DNA floating in the water or absorbed onto suspended particles. However, basic information on eDNA release rate is lacking, despite it being essential for practical applications. In this series of experiments with bluegill sunfish (Lepomis macrochirus), we examined the effect of fish developmental stage on eDNA release rate. eDNA concentration reached equilibrium 3 days after the individual fish were introduced into the separate containers, enabling calculation of the eDNA release rate (copies h-1) from individual fish on the assumption that the number of eDNA released from the fish per unit time equals total degradation in the container (copies h-1). The eDNA release rate was 3-4 times higher in the adult (body weight: 30-75 g) than in the juvenile group (0.5-2.0 g). Such positive relationship between fish size and eDNA release rate support the possibility of biomass rather than density estimation using eDNA techniques. However, the eDNA release rate per fish body weight (copies h-1 g-1) was slightly higher in the juvenile than the adult group, which is likely because of the ontogenetic reduction in metabolic activity. Therefore, quantitative eDNA data should be carefully interpreted to avoid overestimating biomass when the population is dominated by juveniles, because the age structure of the focal population is often variable and unseen in the field. eDNA degradation rates (copies l-1 h-1), calculated by curve fitting of time-dependent changes in eDNA concentrations after fish removal, were 5.1-15.9% per hour (half-life: 6.3 h). This suggests that quantitative eDNA data should be corrected using a degradation curve attained in the target field.

• Publisher: Public Library of Science,Public Library of Science (PLoS)
• Subject: Age composition / Animals / Biodegradation / Biology and Life Sciences / Biomass / Body weight / Containers / Curve fitting / Cytochromes b - genetics / Degradation / Deoxyribonucleic acid / Developmental stages / DNA / DNA - analysis / DNA - metabolism / Earth Sciences / Ecology and Environmental Sciences / Ecosystem / Environmental DNA / Fish / Fish Proteins - genetics / Fishes / Floating structures / Half-Life / Introduced fish / Introduced fishes / Juveniles / Lepomis macrochirus / Mathematical analysis / Metagenomics - methods / Ontogeny / Perciformes - genetics / Perciformes - growth & development / Real-Time Polymerase Chain Reaction - methods / Vertebrates