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Considerations in the search for epistasis
by
Browning, Brian L.
, Byrne, Ross P.
, Alhathli, Elham
, Snyder, Michael P.
, Cooper-Knock, Johnathan
, Twine, Natalie A.
, Schulte, Sara C.
, Wang, Yan
, Stamp, Julian
, Schlüter, Johannes
, Abeln, Sanne
, González-Domínguez, Jorge
, Pianesi, Luna
, Schönhuth, Alexander
, Hu, Jiajing
, Balvert, Marleen
, Benonisdottir, Stefania
, Sng, Letitia M. F.
, Kenna, Kevin
, van Gils, Juami
, Daub, Joséphine T.
, Taş, Gizem
, Harvey, Calum
, Iacoangeli, Alfredo
, Mourragui, Soufiane
, Garrisson, Erik
in
Animal Genetics and Genomics
/ Bioinformatics
/ Biomedical and Life Sciences
/ Epistasis
/ Epistasis, Genetic
/ Evolutionary Biology
/ Explosions
/ Gene polymorphism
/ genes
/ Genotype & phenotype
/ Heritability
/ Human Genetics
/ Humans
/ Life Sciences
/ Machine learning
/ Microbial Genetics and Genomics
/ Models, Genetic
/ Phenotype
/ Phenotypes
/ Plant Genetics and Genomics
/ Polymorphism
/ Polymorphism, Single Nucleotide
/ Review
/ Reviews
/ Single-nucleotide polymorphism
/ Twins
2024
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Considerations in the search for epistasis
by
Browning, Brian L.
, Byrne, Ross P.
, Alhathli, Elham
, Snyder, Michael P.
, Cooper-Knock, Johnathan
, Twine, Natalie A.
, Schulte, Sara C.
, Wang, Yan
, Stamp, Julian
, Schlüter, Johannes
, Abeln, Sanne
, González-Domínguez, Jorge
, Pianesi, Luna
, Schönhuth, Alexander
, Hu, Jiajing
, Balvert, Marleen
, Benonisdottir, Stefania
, Sng, Letitia M. F.
, Kenna, Kevin
, van Gils, Juami
, Daub, Joséphine T.
, Taş, Gizem
, Harvey, Calum
, Iacoangeli, Alfredo
, Mourragui, Soufiane
, Garrisson, Erik
in
Animal Genetics and Genomics
/ Bioinformatics
/ Biomedical and Life Sciences
/ Epistasis
/ Epistasis, Genetic
/ Evolutionary Biology
/ Explosions
/ Gene polymorphism
/ genes
/ Genotype & phenotype
/ Heritability
/ Human Genetics
/ Humans
/ Life Sciences
/ Machine learning
/ Microbial Genetics and Genomics
/ Models, Genetic
/ Phenotype
/ Phenotypes
/ Plant Genetics and Genomics
/ Polymorphism
/ Polymorphism, Single Nucleotide
/ Review
/ Reviews
/ Single-nucleotide polymorphism
/ Twins
2024
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Considerations in the search for epistasis
by
Browning, Brian L.
, Byrne, Ross P.
, Alhathli, Elham
, Snyder, Michael P.
, Cooper-Knock, Johnathan
, Twine, Natalie A.
, Schulte, Sara C.
, Wang, Yan
, Stamp, Julian
, Schlüter, Johannes
, Abeln, Sanne
, González-Domínguez, Jorge
, Pianesi, Luna
, Schönhuth, Alexander
, Hu, Jiajing
, Balvert, Marleen
, Benonisdottir, Stefania
, Sng, Letitia M. F.
, Kenna, Kevin
, van Gils, Juami
, Daub, Joséphine T.
, Taş, Gizem
, Harvey, Calum
, Iacoangeli, Alfredo
, Mourragui, Soufiane
, Garrisson, Erik
in
Animal Genetics and Genomics
/ Bioinformatics
/ Biomedical and Life Sciences
/ Epistasis
/ Epistasis, Genetic
/ Evolutionary Biology
/ Explosions
/ Gene polymorphism
/ genes
/ Genotype & phenotype
/ Heritability
/ Human Genetics
/ Humans
/ Life Sciences
/ Machine learning
/ Microbial Genetics and Genomics
/ Models, Genetic
/ Phenotype
/ Phenotypes
/ Plant Genetics and Genomics
/ Polymorphism
/ Polymorphism, Single Nucleotide
/ Review
/ Reviews
/ Single-nucleotide polymorphism
/ Twins
2024
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Journal Article
Considerations in the search for epistasis
2024
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Overview
Epistasis refers to changes in the effect on phenotype of a unit of genetic information, such as a single nucleotide polymorphism or a gene, dependent on the context of other genetic units. Such interactions are both biologically plausible and good candidates to explain observations which are not fully explained by an additive heritability model. However, the search for epistasis has so far largely failed to recover this missing heritability. We identify key challenges and propose that future works need to leverage idealized systems, known biology and even previously identified epistatic interactions, in order to guide the search for new interactions.
Publisher
BioMed Central,Springer Nature B.V,BMC
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