Journal Article

Effect of Different Ammonia Concentrations on Community Succession of Ammonia-oxidizing Microorganisms in a Simulated Paddy Soil Column

Ping, Zheng, Lidong, Shen, Baolan, Hu, Liping, Lou, Xiangyang, Xu, Shuai, Liu

2012

Overview

Ammonia oxidation is performed by both ammonia-oxidizing bacteria (AOB) and ammonia-oxidizing archaea (AOA). To explore the effect of ammonia concentration on the population dynamic changes of ammonia-oxidizing microorganisms, we examined changes in the abundance and community composition of AOA and AOB in different layers. Most of the archaeal amoA sequences were Nitrosotalea-related and the proportion that Nitrosotalea cluster occupied decreased in the surface layer and increased in the deep layer during the cultivation process. Nitrosopumilus-related sequences were only detected in the deep layer in the first stage and disappeared later. Both phylogenetic and quantitative analysis showed that there were increased Nitrosomonas-related sequences appeared in the surface layer where the ammonia concentration was the highest. Both AOA and AOB OTU numbers in different layers decreased under selective pressure and then recovered. The potential nitrification rates were 25.06 µg · N · L(-1) · g(-1) dry soil · h(-1) in the mid layer which was higher than the other two layers. In general, obvious population dynamic changes were found for both AOA and AOB under the selective pressure of exogenous ammonia and the changes were different in three layers of the soil column.

• Publisher: Public Library of Science,Public Library of Science (PLoS)
• Subject: Ammonia / Ammonia - pharmacology / Ammonia-oxidizing bacteria / Analysis / Archaea / Archaea - drug effects / Archaea - genetics / Archaea - growth & development / Bacteria / Bacteria - drug effects / Bacteria - genetics / Bacteria - growth & development / Base Sequence / Biology / Biota / Communities / Community composition / Cultivation / Ecosystems / Engineering / Environmental aspects / Environmental engineering / Gene Dosage - genetics / Gene Library / Genes / Genes, Archaeal - genetics / Genes, Bacterial - genetics / Genetic Variation - drug effects / Microorganisms / Molecular Sequence Data / Nitrification / Nitrification - genetics / Nitrogen / Oryza - microbiology / Oxidation / Oxidation-Reduction - drug effects / Phylogeny / Physiological aspects / Physiology / Quantitative analysis / Real-Time Polymerase Chain Reaction / Researchers / Rice fields / Soil columns / Soil layers / Soil Microbiology / Soils / Studies / Surface boundary layer / Surface layers