Journal Article

The selenoprotein P 3’ untranslated region is an RNA binding protein platform that fine tunes selenocysteine incorporation

Shetty, Sumangala P., Copeland, Paul R., Kiledjian, Nora T.

2022

Overview

Selenoproteins contain the 21st amino acid, selenocysteine (Sec), which is incorporated at select UGA codons when a specialized hairpin sequence, the Sec insertion sequence (SECIS) element, is present in the 3’ UTR. Aside from the SECIS, selenoprotein mRNA 3’ UTRs are not conserved between different selenoproteins within a species. In contrast, the 3’-UTR of a given selenoprotein is often conserved across species, which supports the hypothesis that cis-acting elements in the 3’-UTR other than the SECIS exert post-transcriptional control on selenoprotein expression. In order to determine the function of one such SECIS context, we chose to focus on the plasma selenoprotein, SELENOP, which is required to maintain selenium homeostasis as a selenium transport protein that contains 10 Sec residues. It is unique in that its mRNA contains two SECIS elements in the context of a highly conserved 843-nucleotide 3’ UTR. Here we have used RNA affinity chromatography and identified PTBP1 as the major RNA binding protein that specifically interacts with the sequence between the two SECIS elements. We then used CRISPR/Cas9 genome editing to delete two regions surrounding the first SECIS element. We found that these sequences are involved in regulating SELENOP mRNA and protein levels, which are inversely altered as a function of selenium concentrations.

• Publisher: Public Library of Science,Public Library of Science (PLoS)
• Subject: 3' Untranslated regions / 3' Untranslated Regions - genetics / Affinity chromatography / Amino acids / Analysis / Base Sequence / Biology and life sciences / Chromatography / Cloning / Codons / Context / CRISPR / Efficiency / Gene sequencing / Genome editing / Genomes / Health aspects / Homeostasis / Nucleotide sequence / Nucleotides / Oxidative stress / Physical Sciences / Plasmids / Post-transcription / Protein transport / Proteins / Research and Analysis Methods / RNA / RNA polymerase / RNA, Messenger - genetics / RNA, Messenger - metabolism / RNA-binding protein / RNA-Binding Proteins - metabolism / Selenium / Selenium - metabolism / Selenocysteine / Selenocysteine - genetics / Selenoprotein P - genetics / Selenoprotein P - metabolism / Selenoproteins / Selenoproteins - genetics / Selenoproteins - metabolism / Thermal cycling