Journal Article

Genome-wide identification, expression analysis and functional study of the GRAS gene family in Tartary buckwheat (Fagopyrum tataricum)

Wu, Qi, Sun, Wenjun, Chen, Hui, Huang, Li, Ma, Zhaotang, Tang, Zizhong, Bu, Tongliang, Li, Chenglei, Liu, Moyang

2019

Overview

Background GRAS are plant-specific transcription factors that play important roles in plant growth and development. Although the GRAS gene family has been studied in many plants, there has been little research on the GRAS genes of Tartary buckwheat ( Fagopyrum tataricum ), which is an important crop rich in rutin. The recently published whole genome sequence of Tartary buckwheat allows us to study the characteristics and expression patterns of the GRAS gene family in Tartary buckwheat at the genome-wide level. Results In this study, 47 GRAS genes of Tartary buckwheat were identified and divided into 10 subfamilies: LISCL, HAM, DELLA, SCR, PAT1, SCL4/7, LAS, SHR, SCL3, and DLT. FtGRAS genes were unevenly distributed on 8 chromosomes, and members of the same subfamily contained similar gene structures and motif compositions. Some FtGRAS genes may have been produced by gene duplications; tandem duplication contributed more to the expansion of the GRAS gene family in Tartary buckwheat. Real-time PCR showed that the transcription levels of FtGRAS were significantly different in different tissues and fruit development stages, implying that FtGRAS might have different functions. Furthermore, an increase in fruit weight was induced by exogenous paclobutrazol, and the transcription level of the DELLA subfamily member FtGRAS22 was significantly upregulated during the whole fruit development stage. Therefore, FtGRAS22 may be a potential target for molecular breeding or genetic editing. Conclusions Collectively, this systematic analysis lays a foundation for further study of the functional characteristics of GRAS genes and for the improvement of Tartary buckwheat crops.

• Publisher: BioMed Central,BioMed Central Ltd,BMC
• Subject: Agriculture / Analysis / Biomedical and Life Sciences / buckwheat / Chromosomes / DNA binding proteins / DNA sequencing / Expression patterns / Fagopyrum tataricum / family / Fruit development / fruit weight / fruiting / Genes / Genetic research / Genetics and crop biotechnology / Genome-wide / Genomes / Genomics / GRAS / growth and development / Life Sciences / nucleotide sequences / paclobutrazol / Plant growth / Plant Sciences / quantitative polymerase chain reaction / Research Article / Rutin / subfamily / Tartary buckwheat / Transcription (Genetics) / Tree Biology