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Phylogenomics reveals multiple losses of nitrogen-fixing root nodule symbiosis

by Xu, Shanyun , Pujic, Petar , Ané, Jean-Michel , Pawlowski, Katharina , Doyle, Jeff J , Laboratoire de Recherche en Sciences Végétales (LRSV) ; Université Toulouse III - Paul Sabatier (UT3) ; Université de Toulouse (UT)-Université de Toulouse (UT)-Centre National de la Recherche Scientifique (CNRS) , ANR-12-BSV7-0007,SYMActino,Endosymbioses chez les plantes actinorhiziennes : signalisation et mécanismes cellulaires associés à la colonisation racinaire , Hilhorst, Henk , Xu, Yan , Cheng, Shifeng , Roswanjaya, Yuda Purwana , Gao, Qiang , Normand, Philippe , Wageningen University and Research [Wageningen] (WUR) , Yang, Huanming , Parniske, Martin , Berry, Alison M , Chang, Yue , Griesmann, Maximilian , Hocher, Valerie , Fang, Xiaodong , Billault-Penneteau, Benjamin , Kohlen, Wouter , Delaux, Pierre-Marc , Fu, Yuan , Liang, Yuhu , Salgado, Marco G , Xu, Xun , Beijing Genomics Institute [Shenzhen] (BGI) , Haberer, Georg , Mayer, Klaus F. X , Crook, Matthew B , University of California [Davis] (UC Davis) ; University of California (UC) , Keller, Jean , Song, Yue , Ludwig Maximilian University [M

in Life Sciences

2018

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Phylogenomics reveals multiple losses of nitrogen-fixing root nodule symbiosis

in Life Sciences

2018

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Phylogenomics reveals multiple losses of nitrogen-fixing root nodule symbiosis

in Life Sciences

2018

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Journal Article

Phylogenomics reveals multiple losses of nitrogen-fixing root nodule symbiosis

Xu, Shanyun,

Pujic, Petar,

Ané, Jean-Michel,

Pawlowski, Katharina,

Doyle, Jeff J,

Laboratoire de Recherche en Sciences Végétales (LRSV) ; Université Toulouse III - Paul Sabatier (UT3) ; Université de Toulouse (UT)-Université de Toulouse (UT)-Centre National de la Recherche Scientifique (CNRS),

ANR-12-BSV7-0007,SYMActino,Endosymbioses chez les plantes actinorhiziennes : signalisation et mécanismes cellulaires associés à la colonisation racinaire,

Hilhorst, Henk,

Xu, Yan,

Cheng, Shifeng,

Roswanjaya, Yuda Purwana,

Gao, Qiang,

Normand, Philippe,

Wageningen University and Research [Wageningen] (WUR),

Yang, Huanming,

Parniske, Martin,

Berry, Alison M,

Chang, Yue,

Griesmann, Maximilian,

Hocher, Valerie,

Fang, Xiaodong,

Billault-Penneteau, Benjamin,

Kohlen, Wouter,

Delaux, Pierre-Marc,

Fu, Yuan,

Liang, Yuhu,

Salgado, Marco G,

Xu, Xun,

Beijing Genomics Institute [Shenzhen] (BGI),

Haberer, Georg,

Mayer, Klaus F. X,

Crook, Matthew B,

University of California [Davis] (UC Davis) ; University of California (UC),

Keller, Jean,

Song, Yue,

Ludwig Maximilian University [M

2018

Overview

The root nodule symbiosis of plants with nitrogen-fixing bacteria impacts global nitrogen cycles and food production but is restricted to a subset of genera within a single clade of flowering plants. To explore the genetic basis for this scattered occurrence, we sequenced the genomes of ten plant species covering the diversity of nodule morphotypes, bacterial symbionts and infection strategies. In a genome-wide comparative analysis of a total of 37 plant species, we discovered signatures of multiple independent loss-of-function events in the indispensable symbiotic regulator NODULE INCEPTION (NIN) in ten out of 13 genomes of non-nodulating species within this clade. The discovery that multiple independent losses shaped the present day distribution of nitrogen-fixing root nodule symbiosis in plants reveals a phylogenetically wider distribution in evolutionary history and a so far underestimated selection pressure against this symbiosis.

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Publisher

American Association for the Advancement of Science (AAAS),CCSD

Subject

Life Sciences

ISBN

0004384492000