Journal Article

A quantitative proteomics dataset for assessment and prediction of low dose X-ray radiation exposure in mice

Morimoto, Alec, Nakamura, Kei, De Chant, Jared, Rudnick, Paul A, Snijders, Antoine M, Ford, Eric C, Chang, Hang, Sanders, Justin A, Wu, Christine C, Noble, William S, Celniker, Susan E, MacCoss, Michael J, Johnson Erickson, Danielle P, Mutawe, Batool, Inman, Jamie L, Chelsky, Daniel, Riffle, Michael, Obst-Huebl, Lieselotte, Merrihew, Gennifer E, Wan, Kenneth H, Shulman, Nicholas, Cao, Ning, Zelter, Alex, Shaver, Benjamin A, Steins, Taylor N, Mao, Jian-Hua

2026

Overview

Ionizing radiation induces molecular responses that may be used to estimate exposure when physical dosimeters are unavailable. Here we present two large-scale proteomics datasets generated from mouse dorsal skin punch samples collected following controlled X-ray exposures spanning multiple doses, dose rates, and post-exposure time points. Experiment 1 comprised 96 samples (including 16 reference samples) collected 6 days after exposure to 0-75 cGy delivered at either 30 or 300 cGy/min. Experiment 2 comprised 936 samples (including 236 reference samples) exposed to 0-100 cGy at either 3 or 28 cGy/min dose rates and harvested between 7 and 150 days post-exposure. All samples were processed using a standardized workflow involving automated bead-based digestion and data-independent acquisition mass spectrometry. The datasets include multiple pooled reference sample types, process controls, and system suitability standards ensuring high quality data. All data presented are available via ProteomeXchange at several levels of processing, from raw files through normalized peptide- and protein-level abundance matrices suitable for biomarker discovery and machine learning applications. This dataset will facilitate generation of new insights into the biological changes and molecular signatures resulting from X-ray exposure in mice and may also help inform future studies in humans.

• Publisher: Cold Spring Harbor Laboratory Preprints