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Bifidobacterial GH146 -l-arabinofuranosidase for the removal of 1,3-l-arabinofuranosides on plant glycans
Bifidobacterial GH146 -l-arabinofuranosidase for the removal of 1,3-l-arabinofuranosides on plant glycans
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Bifidobacterial GH146 -l-arabinofuranosidase for the removal of 1,3-l-arabinofuranosides on plant glycans
Bifidobacterial GH146 -l-arabinofuranosidase for the removal of 1,3-l-arabinofuranosides on plant glycans

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Bifidobacterial GH146 -l-arabinofuranosidase for the removal of 1,3-l-arabinofuranosides on plant glycans
Bifidobacterial GH146 -l-arabinofuranosidase for the removal of 1,3-l-arabinofuranosides on plant glycans
Journal Article

Bifidobacterial GH146 -l-arabinofuranosidase for the removal of 1,3-l-arabinofuranosides on plant glycans

2024
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Overview
l-Arabinofuranosides with -linkages are present in several plant molecules, such as arabinogalactan proteins (AGPs), extensin, arabinan, and rhamnogalacturonan-II. We previously characterized a -l-arabinofuranosidase from Bifidobacterium longum subsp. longum JCM 1217, Bll1HypBA1, which was found to belong to the glycoside hydrolase (GH) family 127. This strain encodes two GH127 genes and two GH146 genes. In the present study, we characterized a GH146 -l-arabinofuranosidase, Bll3HypBA1 (BLLJ₁848), which was found to constitute a gene cluster with AGP-degrading enzymes. This recombinant enzyme degraded AGPs and arabinan, which contain Araf-1,3-Araf structures. In addition, the recombinant enzyme hydrolyzed oligosaccharides containing Araf-1,3-Araf structures but not those containing Araf-1,2-Araf and Araf-1,5-Araf structures. The crystal structures of Bll3HypBA1 were determined at resolutions up to 1.7 Å. The monomeric structure of Bll3HypBA1 comprised a catalytic ([alpha]/[alpha]).sub.6 barrel and two -sandwich domains. A hairpin structure with two -strands was observed in Bll3HypBA1, to extend from a -sandwich domain and partially cover the active site. The active site contains a Zn.sup.2+ ion coordinated by Cys.sub.3-Glu and exhibits structural conservation of the GH127 cysteine glycosidase Bll1HypBA1. This is the first study to report on a 1,3-specific -l-arabinofuranosidase.

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