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A riboswitch selective for the queuosine precursor preQ sub(1) contains an unusually small aptamer domain
by
Kim, Jane N
, Iwata-Reuyl, Dirk
, Breaker, Ronald R
, Lee, Bobby W K
, Winkler, Wade C
, Barrick, Jeffrey E
, Lim, Jinsoo
, Roth, Adam
, Regulski, Elizabeth E
, Jona, Inbal
, Ritwik, Ankita
, Welz, Ruediger
in
Eubacteria
2007
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A riboswitch selective for the queuosine precursor preQ sub(1) contains an unusually small aptamer domain
by
Kim, Jane N
, Iwata-Reuyl, Dirk
, Breaker, Ronald R
, Lee, Bobby W K
, Winkler, Wade C
, Barrick, Jeffrey E
, Lim, Jinsoo
, Roth, Adam
, Regulski, Elizabeth E
, Jona, Inbal
, Ritwik, Ankita
, Welz, Ruediger
in
Eubacteria
2007
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A riboswitch selective for the queuosine precursor preQ sub(1) contains an unusually small aptamer domain
by
Kim, Jane N
, Iwata-Reuyl, Dirk
, Breaker, Ronald R
, Lee, Bobby W K
, Winkler, Wade C
, Barrick, Jeffrey E
, Lim, Jinsoo
, Roth, Adam
, Regulski, Elizabeth E
, Jona, Inbal
, Ritwik, Ankita
, Welz, Ruediger
in
Eubacteria
2007
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A riboswitch selective for the queuosine precursor preQ sub(1) contains an unusually small aptamer domain
Journal Article
A riboswitch selective for the queuosine precursor preQ sub(1) contains an unusually small aptamer domain
2007
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Overview
A previous bioinformatics-based search for riboswitches yielded several candidate motifs in eubacteria. One of these motifs commonly resides in the 5' untranslated regions of genes involved in the biosynthesis of queuosine (Q), a hypermodified nucleoside occupying the anticodon wobble position of certain transfer RNAs. Here we show that this structured RNA is part of a riboswitch selective for 7-aminomethyl-7-deazaguanine (preQ sub(1)), an intermediate in queuosine biosynthesis. Compared with other natural metabolite-binding RNAs, the preQ sub(1) aptamer appears to have a simple structure, consisting of a single stem-loop and a short tail sequence that together are formed from as few as 34 nucleotides. Despite its small size, this aptamer is highly selective for its cognate ligand in vitro and has an affinity for preQ sub(1) in the low nanomolar range. Relatively compact RNA structures can therefore serve effectively as metabolite receptors to regulate gene expression.
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