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"Bell, Jon W."
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Histamine Limits by Country: A Survey and Review
2021
Histamine is a biogenic amine and a food safety hazard, and it is the only biogenic amine regulated by statute or hazard analysis and critical control point guidance. This article reviews the regulations for histamine levels in fish in countries around the world, including maximum limits or levels and sampling procedures in different fish preparations. The maximum histamine levels, sampling plans, and fish products are listed. The country-by-country regulations for maximum histamine acceptance levels in some food products vary by a factor of 8, from 50 ppm in some countries to a maximum of 400 ppm in other countries. For similar food products, the maximum histamine levels vary by a factor of 4 (from 50 ppm to 200 ppm) in, for example, fresh tuna. The country-by-country sampling plans vary widely as well, and these, too, are covered in detail.
Journal Article
Transient and resident Salmonella: A genomic approach to analyzing over a decade of sampling events from fish meal production and storage facilities
by
Likens, Johnathan
,
Tallent, Sandra
,
Bell, Jon W.
in
Animal Feed - microbiology
,
Animals
,
Antimicrobial agents
2025
This study evaluates Salmonella contamination in feed mill production facilities over a 12-year period, analyzing collection events from 12 facilities predominantly located in the southeastern United States. The genomic data reveals a historical contamination rate, with 20% of collection events testing positive for Salmonella . Utilizing next generation sequencing this study evaluated the genetic diversity in the different facilities to determine whether the Salmonella serovars that were found are transient or resident. Salmonella serovars Montevideo, Ruiru, and Senftenberg were frequently detected, with Ruiru showing a particularly high predominance across multiple facilities, suggesting possible common sources of contamination including regional fishing waters and shared additives. The study also highlights the role of transportation and storage methods as a possible cause of cross-contamination. Future research should focus on identifying specific contamination sources and optimizing control measures to reduce Salmonella risks in fish meal production.
Journal Article
Review and Analysis of Tuna Recalls in the United States, 2002 through 2020
by
Debeer, John
,
Baumgartel, D. Mona
,
Blickem, Erika Rene
in
Allergens
,
Allergens - analysis
,
Animals
2022
This review covers 18 years of voluntary recalls of tuna sold commercially in the United States. Recall information is a valuable indicator of failure to implement procedures for food safety. The voluntary recalls involve tuna that was fresh, frozen, processed, hermetically sealed, retorted in a shelf-stable pack (i.e., canned), and formulated into other tuna products. U.S. Food and Drug Administration regulations address the capture, processing, transportation, and sale of raw and processed seafood. These regulations include current good manufacturing practices, the Food Modernization Act, emergency permit controls, and guidelines for low-acid canned foods, seafood hazard analysis and critical control points, food labeling, and sanitary food transportation. Traceability and the food safety culture are important for successfully preventing or implementing recalls. The recalls themselves were separated into product treatment groups: uncooked products, canned shelf-stable products, and products in which tuna was used as an ingredient. The recalls were further categorized and summarized by reason or cause, such as biological and chemical contamination, undeclared ingredients, underprocessing, and foreign materials. The primary causes of recalls of the reviewed tuna products were (in order) Listeria monocytogenes, undeclared allergens, elevated histamine concentrations, and underprocessing of retorted tuna products. The recalls for elevated histamine concentrations primarily affected uncooked (raw) tuna. Recalls for Listeria contamination and the presence of undeclared allergens were primarily class I recalls, and recalls for elevated histamine concentrations and underprocessing were almost always assigned to the less serious recall class II.
Journal Article
THE SUBSEASONAL EXPERIMENT (SubX)
by
Metzger, E. Joseph
,
Sun, Shan
,
Collins, Dan C.
in
Atmospheric forcing
,
Atmospheric sciences
,
Climate change
2019
The Subseasonal Experiment (SubX) is a multimodel subseasonal prediction experiment designed around operational requirements with the goal of improving subseasonal forecasts. Seven global models have produced 17 years of retrospective (re)forecasts and more than a year of weekly real-time forecasts. The reforecasts and forecasts are archived at the Data Library of the International Research Institute for Climate and Society, Columbia University, providing a comprehensive database for research on subseasonal to seasonal predictability and predictions. The SubX models show skill for temperature and precipitation 3 weeks ahead of time in specific regions. The SubX multimodel ensemble mean is more skillful than any individual model overall. Skill in simulating the Madden–Julian oscillation (MJO) and the North Atlantic Oscillation (NAO), two sources of subseasonal predictability, is also evaluated, with skillful predictions of the MJO 4 weeks in advance and of the NAO 2 weeks in advance. SubX is also able to make useful contributions to operational forecast guidance at the Climate Prediction Center. Additionally, SubX provides information on the potential for extreme precipitation associated with tropical cyclones, which can help emergency management and aid organizations to plan for disasters.
Journal Article
Climate-induced phenology shifts linked to range expansions in species with multiple reproductive cycles per year
by
Villoutreix, Romain
,
Thomas, Chris D.
,
Wheat, Christopher W.
in
631/158/1745
,
631/158/2165/2457
,
631/158/672
2019
Advances in phenology (the annual timing of species’ life-cycles) in response to climate change are generally viewed as bioindicators of climate change, but have not been considered as predictors of range expansions. Here, we show that phenology advances combine with the number of reproductive cycles per year (voltinism) to shape abundance and distribution trends in 130 species of British Lepidoptera, in response to ~0.5 °C spring-temperature warming between 1995 and 2014. Early adult emergence in warm years resulted in increased within- and between-year population growth for species with multiple reproductive cycles per year (
n
=
39 multivoltine species). By contrast, early emergence had neutral or negative consequences for species with a single annual reproductive cycle (
n
= 91 univoltine species), depending on habitat specialisation. We conclude that phenology advances facilitate polewards range expansions in species exhibiting plasticity for both phenology and voltinism, but may inhibit expansion by less flexible species.
Many species’ life cycles have moved earlier in the year because of climate change, but we do not know the consequences for range expansions. The authors show that these advances promote range expansions in species with multiple reproductive cycles per year, but not in species with only one.
Journal Article
A New Standard Genetic Map for the Laboratory Mouse
by
Tsaih, Shirng-Wern
,
Wergedal, Jon E
,
Paigen, Beverly
in
Animals
,
Chromosome Mapping
,
Chromosomes
2009
Genetic maps provide a means to estimate the probability of the co-inheritance of linked loci as they are transmitted across generations in both experimental and natural populations. However, in the age of whole-genome sequences, physical distances measured in base pairs of DNA provide the standard coordinates for navigating the myriad features of genomes. Although genetic and physical maps are colinear, there are well-characterized and sometimes dramatic heterogeneities in the average frequency of meiotic recombination events that occur along the physical extent of chromosomes. There also are documented differences in the recombination landscape between the two sexes. We have revisited high-resolution genetic map data from a large heterogeneous mouse population and have constructed a revised genetic map of the mouse genome, incorporating 10,195 single nucleotide polymorphisms using a set of 47 families comprising 3546 meioses. The revised map provides a different picture of recombination in the mouse from that reported previously. We have further integrated the genetic and physical maps of the genome and incorporated SSLP markers from other genetic maps into this new framework. We demonstrate that utilization of the revised genetic map improves QTL mapping, partially due to the resolution of previously undetected errors in marker ordering along the chromosome.
Journal Article
A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis
2021
Iron is essential for many biological functions and iron deficiency and overload have major health implications. We performed a meta-analysis of three genome-wide association studies from Iceland, the UK and Denmark of blood levels of ferritin (N = 246,139), total iron binding capacity (N = 135,430), iron (N = 163,511) and transferrin saturation (N = 131,471). We found 62 independent sequence variants associating with iron homeostasis parameters at 56 loci, including 46 novel loci. Variants at DUOX2, F5, SLC11A2 and TMPRSS6 associate with iron deficiency anemia, while variants at TF, HFE, TFR2 and TMPRSS6 associate with iron overload. A HBS1L-MYB intergenic region variant associates both with increased risk of iron overload and reduced risk of iron deficiency anemia. The DUOX2 missense variant is present in 14% of the population, associates with all iron homeostasis biomarkers, and increases the risk of iron deficiency anemia by 29%. The associations implicate proteins contributing to the main physiological processes involved in iron homeostasis: iron sensing and storage, inflammation, absorption of iron from the gut, iron recycling, erythropoiesis and bleeding/menstruation.Bell et al. report 46 new loci associated with biomarkers of iron homeostasis, including ferritin levels, iron binding capacity, and iron saturation, in the Icelandic, Danish and UK populations. The associated loci point to new iron-regulating proteins and important genetic differences between men and women.
Journal Article
A contact binary satellite of the asteroid (152830) Dinkinesh
by
Taylor, Howard
,
Wallace, Mike
,
Nelson, Derek S.
in
639/33/445/536
,
639/33/445/848
,
Angular momentum
2024
Asteroids with diameters less than about 5 km have complex histories because they are small enough for radiative torques (that is, YORP, short for the Yarkovsky–O’Keefe–Radzievskii–Paddack effect)
1
to be a notable factor in their evolution
2
. (152830) Dinkinesh is a small asteroid orbiting the Sun near the inner edge of the main asteroid belt with a heliocentric semimajor axis of 2.19
au
; its S-type spectrum
3
,
4
is typical of bodies in this part of the main belt
5
. Here we report observations by the Lucy spacecraft
6
,
7
as it passed within 431 km of Dinkinesh. Lucy revealed Dinkinesh, which has an effective diameter of only 720 m, to be unexpectedly complex. Of particular note is the presence of a prominent longitudinal trough overlain by a substantial equatorial ridge and the discovery of the first confirmed contact binary satellite, now named (152830) Dinkinesh I Selam. Selam consists of two near-equal-sized lobes with diameters of 210 m and 230 m. It orbits Dinkinesh at a distance of 3.1 km with an orbital period of about 52.7 h and is tidally locked. The dynamical state, angular momentum and geomorphologic observations of the system lead us to infer that the ridge and trough of Dinkinesh are probably the result of mass failure resulting from spin-up by YORP followed by the partial reaccretion of the shed material. Selam probably accreted from material shed by this event.
Observations from the Lucy spacecraft of the small main-belt asteroid (152830) Dinkinesh reveals unexpected complexity, with a longitudinal trough and equatorial ridge, as well as the discovery of the first contact binary satellite.
Journal Article
Conservative versus liberal oxygenation targets in critically ill children (Oxy-PICU): a UK multicentre, open, parallel-group, randomised clinical trial
2024
The optimal target for systemic oxygenation in critically ill children is unknown. Liberal oxygenation is widely practiced, but has been associated with harm in paediatric patients. We aimed to evaluate whether conservative oxygenation would reduce duration of organ support or incidence of death compared to standard care.
Oxy-PICU was a pragmatic, multicentre, open-label, randomised controlled trial in 15 UK paediatric intensive care units (PICUs). Children admitted as an emergency, who were older than 38 weeks corrected gestational age and younger than 16 years receiving invasive ventilation and supplemental oxygen were randomly allocated in a 1:1 ratio via a concealed, central, web-based randomisation system to conservative peripheral oxygen saturations ([SpO2] 88–92%) or liberal (SpO2 >94%) targets. The primary outcome was the duration of organ support at 30 days following random allocation, a rank-based endpoint with death either on or before day 30 as the worst outcome (a score equating to 31 days of organ support), with survivors assigned a score between 1 and 30 depending on the number of calendar days of organ support received. The primary effect estimate was the probabilistic index, a value greater than 0·5 indicating more than 50% probability that conservative oxygenation is superior to liberal oxygenation for a randomly selected patient. All participants in whom consent was available were included in the intention-to-treat analysis. The completed study was registered with the ISRCTN registry (ISRCTN92103439).
Between Sept 1, 2020, and May 15, 2022, 2040 children were randomly allocated to conservative or liberal oxygenation groups. Consent was available for 1872 (92%) of 2040 children. The conservative oxygenation group comprised 939 children (528 [57%] of 927 were female and 399 [43%] of 927 were male) and the liberal oxygenation group included 933 children (511 [56%] of 920 were female and 409 [45%] of 920 were male). Duration of organ support or death in the first 30 days was significantly lower in the conservative oxygenation group (probabilistic index 0·53, 95% CI 0·50–0·55; p=0·04 Wilcoxon rank-sum test, adjusted odds ratio 0·84 [95% CI 0·72–0·99]). Prespecified adverse events were reported in 24 (3%) of 939 patients in the conservative oxygenation group and 36 (4%) of 933 patients in the liberal oxygenation group.
Among invasively ventilated children who were admitted as an emergency to a PICU receiving supplemental oxygen, a conservative oxygenation target resulted in a small, but significant, greater probability of a better outcome in terms of duration of organ support at 30 days or death when compared with a liberal oxygenation target. Widespread adoption of a conservative oxygenation saturation target (SpO2 88–92%) could help improve outcomes and reduce costs for the sickest children admitted to PICUs.
UK National Institute for Health and Care Research Health Technology Assessment Programme.
Journal Article
The Australian Group on Antimicrobial Resistance
by
Coombs, Geoffrey W.
,
Daley, Denise A.
,
Mowlaboccus, Shakeel
in
Annual reports
,
Antimicrobial agents
,
Antimicrobial resistance
2024
Antimicrobials are an integral component of healthcare delivery. When resistance to an antimicrobial emerges, it has a significant impact on an individual’s treatment and the community more broadly. In Australia, to monitor antimicrobial resistance in human health, the Australian Group on Antimicrobial Resistance (AGAR) performs three ongoing blood-based antimicrobial surveillance programs: the Australian Staphylococcus aureus Surveillance Outcome Program (ASSOP); the Australian Enterococcal Surveillance Outcome Program (AESOP); and the Gram-negative Surveillance Outcome Program (GnSOP). All data are available on the AGAR website and are included in the Australian Government Department of Health and Aged Care’s Antimicrobial Use and Resistance in Australia Surveillance System.
Journal Article