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Microbial communities and their associated enzyme activities affect the amount and chemical quality of carbon (C) in soils. Increasing nitrogen (N) deposition, particularly in N-rich tropical forests, is likely to change the composition and behavior of microbial communities and feed back on ecosystem structure and function. This study presents a novel assessment of mechanistic links between microbial responses to N deposition and shifts in soil organic matter (SOM) quality and quantity. We used phospholipid fatty acid (PLFA) analysis and microbial enzyme assays in soils to assess microbial community responses to long-term N additions in two distinct tropical rain forests. We used soil density fractionation and 13 C nuclear magnetic resonance (NMR) spectroscopy to measure related changes in SOM pool sizes and chemical quality. Microbial biomass increased in response to N fertilization in both tropical forests and corresponded to declines in pools of low-density SOM. The chemical quality of this soil C pool reflected ecosystem-specific changes in microbial community composition. In the lower-elevation forest, there was an increase in gram-negative bacteria PLFA biomass, and there were significant losses of labile C chemical groups (O-alkyls). In contrast, the upper-elevation tropical forest had an increase in fungal PLFAs with N additions and declines in C groups associated with increased soil C storage (alkyls). The dynamics of microbial enzymatic activities with N addition provided a functional link between changes in microbial community structure and SOM chemistry. Ecosystem-specific changes in microbial community composition are likely to have far-reaching effects on soil carbon storage and cycling. This study indicates that microbial communities in N-rich tropical forests can be sensitive to added N, but we can expect significant variability in how ecosystem structure and function respond to N deposition among tropical forest types.

Soil organic matter (SOM) processes in dynamic landscapes are strongly influenced by soil erosion and sedimentation. We determined the contribution of physical isolation of organic matter (OM) inside aggregates, chemical interaction of OM with soil minerals, and molecular structure of SOM in controlling storage and persistence of SOM in different types of eroding and depositional landform positions. By combining density fractionation with elemental and spectroscopic analyses, we showed that SOM in depositional settings is less transformed and better preserved than SOM in eroding landform positions. However, which environmental factors exert primary control on storage and persistence of SOM depended on the nature of the landform position considered. In an annual grassland watershed, protection of SOM by physical isolation inside aggregates and chemical association of organic matter (complexation) with soil minerals, as assessed by correlation with radiocarbon concentration, were more effective in the poorly drained, lowest‐lying depositional landform positions, compared to well‐drained landform positions in the upper parts of the watershed. Results of this study demonstrated that processes of soil erosion and deposition are important mechanisms of long‐term OM stabilization. Key Points Eroding and depositional landform positions vary in terms of soil carbon storage Mechanisms of SOM stabilization depend on nature of landform position considered Significant fraction of SOM in depositional positions can be easily mineralized

We report a series of ionically modified ferrocene compounds for hybrid lithium-organic non-aqueous redox flow batteries, based on the ferrocene/ferrocenium redox couple as the active catholyte material. Tetraalkylammonium ionic moieties were incorporated into the ferrocene structure, in order to enhance the solubility of the otherwise relatively insoluble ferrocene. The effect of various counter anions of the tetraalkylammonium ionized species appended to the ferrocene, such as bis(trifluoromethanesulfonyl)imide, hexafluorophosphate, perchlorate, tetrafluoroborate and dicyanamide on the solubility of the ferrocene was investigated. The solution chemistry of the ferrocene species was studied, in order to understand the mechanism of solubility enhancement. Finally, the electrochemical performance of these ionized ferrocene species was evaluated and shown to have excellent cell efficiency and superior cycling stability.

NMR metabolomics, consisting of solid state high resolution magic angle spinning (HR-MAS) 1H-NMR, liquid state high resolution 1H-NMR, and principal components analysis (PCA) has been used to study secondary metastatic B16-F10 melanoma in C57BL/6J mouse liver. The melanoma group can be differentiated from its control group by PCA analysis of the estimates of absolute concentrations from liquid state 1H-NMR spectra on liver tissue extracts or by the estimates of absolute peak intensities of metabolites from 1H HR-MAS-NMR data on intact liver tissues. In particular, we found that the estimates of absolute concentrations of glutamate, creatine, fumarate and cholesterol are elevated in the melanoma group as compared to controls, while the estimates of absolute concentrations of succinate, glycine, glucose, and the family of linear lipids including long chain fatty acids, total choline and acyl glycerol are decreased. The ratio of glycerophosphocholine (GPC) to phosphocholine (PCho) is increased by about 1.5 fold in the melanoma group, while the estimate of absolute concentration of total choline is actually lower in melanoma mice. These results suggest the following picture in secondary melanoma metastasis: Linear lipid levels are decreased by beta oxidation in the melanoma group, which contributes to an increase in the synthesis of cholesterol, and also provides an energy source input for TCA cycle. These findings suggest a link between lipid oxidation, the TCA cycle and the hypoxia-inducible factors (HIF) signal pathway in tumor metastases. Thus, this study indicates that the metabolic profile derived from NMR analysis can provide a valuable bio-signature of malignancy and cell hypoxia in metastatic melanoma.

Small variations in the primary amino acid sequence of extracellular matrix proteins can have profound effects on the biomineralization of hard tissues. For example, a change in one amino acid within the amelogenin protein can lead to drastic changes in enamel phenotype, resulting in amelogenesis imperfecta, enamel that is defective and easily damaged. Despite the importance of these undesirable phenotypes, there is very little understanding of how single amino acid variation in amelogenins can lead to malformed enamel. Here, we aim to develop a thermodynamic under-standing of how protein variants can affect steps of the biomineralization process. High-resolution, in situ atomic force microscopy (AFM) showed that altering one amino acid within the murine amelogenin sequence (natural variants T21 and P41T, and experimental variant P71T) resulted in an increase in the quantity of protein adsorbed onto hydroxyapatite (HAP) and the formation of multiple protein layers. Quantitative analysis of the equilibrium adsorbate amounts revealed that the protein variants had higher oligomer–oligomer binding energies. MMP20 enzyme degradation and HAP mineralization studies showed that the amino acid variants slowed the degradation of amelogenin by MMP20 and inhibited the growth and phase transformation of HAP. We propose that the protein variants cause malformed enamel because they bind excessively to HAP and disrupt the normal HAP growth and enzymatic degradation processes. The in situ methods applied to determine the energetics of molecular level processes are powerful tools toward understanding the mechanisms of biomineralization.

The use of fast pyrolysis oil as a potential renewable liquid transportation fuel alternative to crude oil depends on successful catalytic upgrading to produce a refinery-ready product with oxygen content and qualities (i.e., specific functional group or compound content) compatible with the product’s proposed refinery insertion point. Similar to crude oil hydrotreating, catalytic upgrading of bio-oil requires high temperature and pressure. However, processing thermally unstable pyrolysis oil is not straightforward. For years, a two-temperature, downflow trickle bed reactor using sulfided catalysts was the state-of-the art for continuous operation. However, pressure excursion due to plug formation still occurred, typically at the high-temperature transition zone, and led to a process shutdown within 140 h. A plug typically consists of polymerized bio-oil and inorganic constituents that bind catalysts at specific portions preventing liquid and gas flow through the bed, resulting to a potential pressure incursion. Recently, two factors were found to enable continuous operation by preventing reactor shutdown due to plug formation: (1) a bio-oil pretreatment process prior to the two-temperature reactor, and (2) a robust commercial catalyst for the high temperature zone reactor. Here, we report the use and characterization of bio-oil that was pre-treated at 413 K and 8.4 MPa under flowing H2 (500 L H2/L bio-oil, 0.5 L bio-oil/L catalyst bed) to enable the long-term (cumulative 1440-h) bio-oil hydroprocessing.

Background and Aims Rainfall is expected to show greater and more variable changes in response to anticipated rising of earth surface temperatures than most other climatic variables, and will be a major driver of ecosystem change. Methods We studied the effects of predicted changes in California's rainy season for storage and stabilization mechanisms of soil organic matter (SOM). In a controlled and replicated experiment, we amended rainfall over large plots of natural grassland in accordance with alternative scenarios of future climate change. Results We found that increases in annual rainfall have important consequences for soil carbon (C) storage, but that the strength and even direction of these effects depend critically on seasonal timing. Additional rainfall during the winter rainy season led to C loss from soil while additions after the typical rainy season increased soil C content. Analysis of Mineral-Organic Matter (OM) associations reveals a potentially powerful mechanism underlying this difference: increased winter rainfall greatly diminished the role of Fe and Al oxides in SOM stabilization. Dithionite extractable crystalline Fe oxides explained more than 35% of the variability in C storage under ambient control and extended spring rainfall conditions, compared to less than 0.01% under increased winter rainfall. Likewise, poorly crystalline Fe and Al oxides explained more than 25 and 40% of the variability in C storage in the control and extended spring rainfall treatments, respectively, but less than 5% in the increased winter rainfall treatment. Conclusions Increases in annual precipitation identical in amount but at three-month offsets produced opposite effects on soil C storage. Such clear differences in the amount and chemical composition of SOM, and in the vertical distribution of oxides in the soil profile in response to treatment timing carry important implications for the C sequestration trajectory of this ecosystem.

Determination of inorganic phosphorus (P) species in anthropogenically acidified soils of Washington's Columbia Basin (CB) is vital in understanding which available P extraction methods are most appropriate so that fertilizer recommendations can be made accurately. The objective of this work was to determine dominant P species in anthropogenically acidified soils of the CB using chemical fractionation and 31P nuclear magnetic resonance (NMR) spectroscopy. Soil samples from the CB ranging in pH (5.2–8.4) together with native calcareous and acidic soils were analyzed. Chemical P fractionation to determine soluble, aluminum (Al), iron (Fe), reductant soluble P (RSP), and calcium (Ca) showed that CB soils contain more than 60% of inorganic P as Ca‐P. Significant differences in other fractions were most pronounced in the Fe‐P form. As soil pH decreased the proportion of Fe‐P extracted increased suggesting a possible transition in soil P chemistry concomitant with change from high to low pH. Solid‐state 31P NMR spectroscopy was limited by the low soil P content and interference from paramagnetic ions. No definitive determination of inorganic soil P species could be made. Despite these limitations, some generalized inferences can be made using the spinning side band (SSB) patterns. Because the traditional sodium bicarbonate (NaHCO3) extractable P (Olsen phosphorus [OP]) method assumes a dominant Ca‐P form, fertility recommendations based on OP appears to be the best option for determining plant available P for soils that have been acidified by human involvement.

We report quantitative infrared spectra of vapor-phase hydrogen peroxide (H₂O₂) with all spectra pressure-broadened to atmospheric pressure. The data were generated by injecting a concentrated solution (83%) of H₂O₂ into a gently heated disseminator and diluting it with pure N₂ carrier gas. The water vapor lines were quantitatively subtracted from the resulting spectra to yield the spectrum of pure H₂O₂. The results for the ν₆ band strength (including hot bands) compare favorably with the results of Klee et al. (J Mol. Spectrosc. 195:154, 1999) as well as with the HITRAN values. The present results are 433 and 467 cm⁻² atm⁻¹ (±8 and ±3% as measured at 298 and 323 K, respectively, and reduced to 296 K) for the band strength, matching well the value reported by Klee et al. (S = 467 cm⁻² atm⁻¹ at 296 K) for the integrated band. The ν₁ + ν₅ near-infrared band between 6,900 and 7,200 cm⁻¹ has an integrated intensity S = 26.3 cm⁻² atm⁻¹, larger than previously reported values. Other infrared and near-infrared bands and their potential for atmospheric monitoring are discussed.

Small variations in the primary amino acid sequence of extracellular matrix proteins can have profound effects on the biomineralization of hard tissues. For example, a change in one amino acid within the amelogenin protein can lead to drastic changes in enamel phenotype, resulting in amelogenesis imperfecta, enamel that is defective and easily damaged. Despite the importance of these undesirable phenotypes, there is very little understanding of how single amino acid variation in amelogenins can lead to malformed enamel. Here, we aim to develop a thermodynamic understanding of how protein variants can affect steps of the biomineralization process. High-resolution, in situ atomic force microscopy (AFM) showed that altering one amino acid within the murine amelogenin sequence (natural variants T21 and P41T, and experimental variant P71T) resulted in an increase in the quantity of protein adsorbed onto hydroxyapatite (HAP) and the formation of multiple protein layers. Quantitative analysis of the equilibrium adsorbate amounts revealed that the protein variants had higher oligomer–oligomer binding energies. MMP20 enzyme degradation and HAP mineralization studies showed that the amino acid variants slowed the degradation of amelogenin by MMP20 and inhibited the growth and phase transformation of HAP. We propose that the protein variants cause malformed enamel because they bind excessively to HAP and disrupt the normal HAP growth and enzymatic degradation processes. The in situ methods applied to determine the energetics of molecular level processes are powerful tools toward understanding the mechanisms of biomineralization.