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The adsorption properties and mechanics of selected endocrine disrupting compounds; 17 β-estradiol, 17 α - ethinylestradiol and bisphenol A on locally available black tea leaves waste and granular activated carbon were investigated. The results obtained indicated that the kinetics of adsorption were pH, adsorbent dose, contact time and temperature dependent with equilibrium being reached at 20 to 40 minutes for tea leaves waste and 40 to 60 minutes for granular activated compound. Maximum adsorption capacities of 3.46, 2.44 and 18.35 mg/g were achieved for tea leaves waste compared to granular activated compound capacities of 4.01, 2.97 and 16.26 mg/g for 17 β- estradiol, 17 α- ethinylestradiol and bisphenol A respectively. Tea leaves waste adsorption followed pseudo-first order kinetics while granular activated compound fitted better to the pseudo-second order kinetic model. The experimental isotherm data for both tea leaves waste and granular activated compound showed a good fit to the Langmuir, Freundlich and Temkin isotherm models with the Langmuir model showing the best fit. The thermodynamic and kinetic data for the adsorption indicated that the adsorption process for tea leaves waste was predominantly by physical adsorption while the granular activated compound adsorption was more chemical in nature. The results have demonstrated the potential of waste tea leaves for the adsorptive removal of endocrine disrupting compounds from water.

In lakes, the diversity of eukaryotic picoplankton has been recently studied by the analysis of 18S ribosomal RNA gene sequences; however, quantitative data are rare. In this study, the vertical structure and abundance of the small eukaryotic size fraction (0.2-5 mum) were investigated in three lakes by tyramide signal amplification-fluorescent in situ hybridization targeting six phylogenetic groups: Chlorophyta, Haptophyta, Cercozoa, LKM11, Perkinsozoa and fungi. The groups targeted in this study are found in all lakes; however, both the abundance and structure of small eukaryotes are dependent on the system's productivity and depth. These data highlighted the presence of Chlorophyta contributing on an average to 19.3%, 14.7% and 41.2% of total small eukaryotes in lakes Bourget, Aydat and Pavin, respectively. This study also revealed the unexpected importance of Haptophyta, reaching 62.8% of eukaryotes in the euphotic zone of Lake Bourget. The high proportions of these pigmented cells highlight the underestimation of these groups by PCR-based methods. The presence of pigmented Chlorophyta in the deepest zones of the lakes suggests a mixotrophic behaviour of these taxa. We also confirmed the presence of putative parasites such as Perkinsozoa (5.1% of small eukaryotes in Lake Pavin and Bourget) and, with lower abundances, fungi (targeted by the MY1574 probe). Cells targeted by LKM11 probes represented the second group of abundance within heterotrophs. Open questions regarding the functional roles of the targeted groups arise from this study, especially regarding parasitism and mixotrophy, which are interactions poorly taken into account in planktonic food web models.

In plants, microRNAs (miRNAs) play essential roles in growth, development, yield, stress response and interactions with pathogens. However no miRNA has been experimentally documented to be functionally involved in fruit ripening although many miRNAs have been profiled in fruits. Here we show that SlymiR157 and SlymiR156 differentially modulate ripening and softening in tomato (Solanum lycopersicum). SlymiR157 is expressed and developmentally regulated in normal tomato fruits and in those of the Colourless non-ripening (Cnr) epimutant. It regulates expression of the key ripening gene LeSPL-CNR in a likely dose-dependent manner through miRNA-induced mRNA degradation and translation repression. Viral delivery of either pre-SlymiR157 or mature SlymiR157 results in delayed ripening. Furthermore, qRT-PCR profiling of key ripening regulatory genes indicates that the SlymiR157-target LeSPL-CNR may affect expression of LeMADS-RIN, LeHB1, SlAP2a and SlTAGL1. However SlymiR156 does not affect the onset of ripening, but it impacts fruit softening after the red ripe stage. Our findings reveal that working together with a ripening network of transcription factors, SlymiR157 and SlymiR156 form a critical additional layer of regulatory control over the fruit ripening process in tomato.

International audience

Aim: To collect and identify the issues that may affect the future global and local management of biological invasions in the next 20–50 years and provide guidance for the prioritization of actions and policies responding to the management challenges of the future. Location: Global Methods: We used an open online survey to poll specialists and stakeholders from around the world as to their opinion on the three most important future issues both globally and at their respective local working level. Results: The 240 respondents identified 629 global issues that we categorized into topics. We summarized the highest rated topics into five broad thematic areas: (1) environmental change, particularly climate change, (2) the spread of species through trade, (3) public awareness, (4) the development of new technologies to enhancemanagement and (5) the need to strengthen policies. The respondents also identified 596 issues at their respective local working levels. Management, early detection, prevention and funding-related issues all ranked higher than at the global level. Our global audience of practitioners, policymakers and researchers also elicited topics not identified in horizon scanning exercises led by scientists including potential human health impacts, the need for better risk assessments and legislation, the role of human migration and water management. Main conclusions: The topic areas identified in this horizon scan provide guidancewhere future policy priorities for invasive alien species should be set. First, to reduce the magnitude and speed of environmental change and its impacts on biological invasions; second, to restrict the movement of potentially invasive alien species via trade; third, to raise awareness with the general public and empower them to act; and finally, to invest in innovative technologies that can detect and mitigate adverse impacts of introduced species.

Emerging and invasive tree pests and pathogens in Europe are increasing in number and range, having impacts on biodiversity, forest services, ecosystems and human well-being. Stakeholders involved in tree and forest management contribute to the detection and management of new and emerging tree pests and pathogens (PnPs). We surveyed different groups of stakeholders in European countries. The stakeholders were mainly researchers, tree health surveyors and forest managers, as well as forest owners, nurseries, policy-makers, advisors, forestry authorities, NGOs and civil society. We investigated which tools they used to detect and manage PnPs, surveyed their current PnP awareness and knowledge and collated the new and emerging PnP species of concern to them. The 237 respondents were based in 15 European countries, with the majority from the United Kingdom, France and the Czech Republic. There was a strong participation of respondents with a work focus on research and surveying, whereas timber traders and plant importers were less represented. Respondents were surveyed on 18 new, emerging PnPs in Europe and listed an additional 37 pest species and 21 pathogen species as potential future threats. We found that species on EPPO’s list of ‘priority pests’ were better known than those not listed. Stakeholders working in urban environments were more aware of PnPs compared to those working in rural areas. Stakeholders’ awareness of PnPs was not related to the number of new, emerging PnP species present in a country. Stakeholders want access to more detection and management tools, including long-term citizen-science monitoring, maps showing spread and range of new PnPs, pest identification smartphone apps, hand-held detection devices, drone monitoring and eDNA metabarcoding. To help facilitate better forest health across Europe, they called for mixed forest development, reduced nursery stock movement, biosecurity and data sharing amongst organisations. These results indicate that stakeholder knowledge of a few key PnP may be good, but given that the large diversity of threats is so large and future risks unknown, we conclude that multiple and varied methods for generic detection, mitigation and management methods, many in development, are needed in the hands of stakeholders surveying and managing trees and woodlands in Europe.

The complex and dynamic three-dimensional organization of chromatin within the nucleus makes understanding the control of gene expression challenging, but also opens up possible ways to epigenetically modulate gene expression. Because plants are sessile, they evolved sophisticated ways to rapidly modulate gene expression in response to environmental stress, that are thought to be coordinated by changes in chromatin conformation to mediate specific cellular and physiological responses. However, to what extent and how stress induces dynamic changes in chromatin reorganization remains poorly understood. Here, we comprehensively investigated genome-wide chromatin changes associated with transcriptional reprogramming response to heat stress in tomato. Our data show that heat stress induces rapid changes in chromatin architecture, leading to the transient formation of promoter-enhancer contacts, likely driving the expression of heat-stress responsive genes. Furthermore, we demonstrate that chromatin spatial reorganization requires HSFA1a, a transcription factor (TF) essential for heat stress tolerance in tomato. In light of our findings, we propose that TFs play a key role in controlling dynamic transcriptional responses through 3D reconfiguration of promoter-enhancer contacts. Here the authors show genome-wide chromatin changes and transcriptional reprogramming occur in response to heat stress in tomato, leading to the transient formation of promoter-enhancer contacts to drive the expression of heat-stress responsive genes. Furthermore, they show chromatin spatial reorganization requires HSFA1a, a transcription factor (TF) essential for heat stress tolerance in tomato.

Abstract The Piacenzian stage of the Pliocene (2.6 to 3.6 Ma) is the most recent past interval of sustained global warmth with mean global temperatures markedly higher (by ~2–3 °C) than today. Quantifying CO 2 levels during the mid-Piacenzian Warm Period (mPWP) provides a means, therefore, to deepen our understanding of Earth System behaviour in a warm climate state. Here we present a new high-resolution record of atmospheric CO 2 using the δ 11 B-pH proxy from 3.35 to 3.15 million years ago (Ma) at a temporal resolution of 1 sample per 3–6 thousand years (kyrs). Our study interval covers both the coolest marine isotope stage of the mPWP, M2 (~3.3 Ma) and the transition into its warmest phase including interglacial KM5c (centered on ~3.205 Ma) which has a similar orbital configuration to present. We find that CO 2 ranged from $${{\\bf{394}}}_{{\\boldsymbol{-}}{\\bf{9}}}^{{\\boldsymbol{+}}{\\bf{34}}}$$ 394 − 9 + 34 ppm to $${{\\bf{330}}}_{{\\boldsymbol{-}}{\\bf{21}}}^{{\\boldsymbol{+}}{\\bf{14}}}$$ 330 − 21 + 14 ppm: with CO 2 during the KM5c interglacial being $${{\\bf{391}}}_{{\\boldsymbol{-}}{\\bf{28}}}^{{\\boldsymbol{+}}{\\bf{30}}}$$ 391 − 28 + 30 ppm (at 95% confidence). Our findings corroborate the idea that changes in atmospheric CO 2 levels played a distinct role in climate variability during the mPWP. They also facilitate ongoing data-model comparisons and suggest that, at present rates of human emissions, there will be more CO 2 in Earth’s atmosphere by 2025 than at any time in at least the last 3.3 million years.

Plants have unique features that evolved in response to their environments and ecosystems. A full account of the complex cellular networks that underlie plant-specific functions is still missing. We describe a proteome-wide binary protein-protein interaction map for the interactome network of the plant Arabidopsis thaliana containing about 6200 highly reliable interactions between about 2700 proteins. A global organization of plant biological processes emerges from community analyses of the resulting network, together with large numbers of novel hypothetical functional links between proteins and pathways. We observe a dynamic rewiring of interactions following gene duplication events, providing evidence for a model of evolution acting upon interactome networks. This and future plant interactome maps should facilitate systems approaches to better understand plant biology and improve crops.