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"Dunham, Jason B."
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Can air temperature be used to project influences of climate change on stream temperature?
by
Arismendi, Ivan
,
Dunham, Jason B
,
Johnson, Sherri L
in
Air temperature
,
Climate change
,
Climate models
2014
Worldwide, lack of data on stream temperature has motivated the use of regression-based statistical models to predict stream temperatures based on more widely available data on air temperatures. Such models have been widely applied to project responses of stream temperatures under climate change, but the performance of these models has not been fully evaluated. To address this knowledge gap, we examined the performance of two widely used linear and nonlinear regression models that predict stream temperatures based on air temperatures. We evaluated model performance and temporal stability of model parameters in a suite of regulated and unregulated streams with 11-44 years of stream temperature data. Although such models may have validity when predicting stream temperatures within the span of time that corresponds to the data used to develop them, model predictions did not transfer well to other time periods. Validation of model predictions of most recent stream temperatures, based on air temperature-stream temperature relationships from previous time periods often showed poor performance when compared with observed stream temperatures. Overall, model predictions were less robust in regulated streams and they frequently failed in detecting the coldest and warmest temperatures within all sites. In many cases, the magnitude of errors in these predictions falls within a range that equals or exceeds the magnitude of future projections of climate-related changes in stream temperatures reported for the region we studied (between 0.5 and 3.0 °C by 2080). The limited ability of regression-based statistical models to accurately project stream temperatures over time likely stems from the fact that underlying processes at play, namely the heat budgets of air and water, are distinctive in each medium and vary among localities and through time.
Journal Article
Climate vulnerability assessment for Pacific salmon and steelhead in the California Current Large Marine Ecosystem
by
Greene, Correigh M.
,
Mantua, Nathan J.
,
Johnson, Rachel C.
in
Acidification
,
Adaptation
,
Animal behavior
2019
Major ecological realignments are already occurring in response to climate change. To be successful, conservation strategies now need to account for geographical patterns in traits sensitive to climate change, as well as climate threats to species-level diversity. As part of an effort to provide such information, we conducted a climate vulnerability assessment that included all anadromous Pacific salmon and steelhead (Oncorhynchus spp.) population units listed under the U.S. Endangered Species Act. Using an expert-based scoring system, we ranked 20 attributes for the 28 listed units and 5 additional units. Attributes captured biological sensitivity, or the strength of linkages between each listing unit and the present climate; climate exposure, or the magnitude of projected change in local environmental conditions; and adaptive capacity, or the ability to modify phenotypes to cope with new climatic conditions. Each listing unit was then assigned one of four vulnerability categories. Units ranked most vulnerable overall were Chinook (O. tshawytscha) in the California Central Valley, coho (O. kisutch) in California and southern Oregon, sockeye (O. nerka) in the Snake River Basin, and spring-run Chinook in the interior Columbia and Willamette River Basins. We identified units with similar vulnerability profiles using a hierarchical cluster analysis. Life history characteristics, especially freshwater and estuary residence times, interplayed with gradations in exposure from south to north and from coastal to interior regions to generate landscape-level patterns within each species. Nearly all listing units faced high exposures to projected increases in stream temperature, sea surface temperature, and ocean acidification, but other aspects of exposure peaked in particular regions. Anthropogenic factors, especially migration barriers, habitat degradation, and hatchery influence, have reduced the adaptive capacity of most steelhead and salmon populations. Enhancing adaptive capacity is essential to mitigate for the increasing threat of climate change. Collectively, these results provide a framework to support recovery planning that considers climate impacts on the majority of West Coast anadromous salmonids.
Journal Article
Shade, light, and stream temperature responses to riparian thinning in second-growth redwood forests of northern California
by
Roon, David A.
,
Dunham, Jason B.
,
Groom, Jeremiah D.
in
Biodiversity
,
Biology and Life Sciences
,
California
2021
Resource managers in the Pacific Northwest (USA) actively thin second-growth forests to accelerate the development of late-successional conditions and seek to expand these restoration thinning treatments into riparian zones. Riparian forest thinning, however, may impact stream temperatures–a key water quality parameter often regulated to protect stream habitat and aquatic organisms. To better understand the effects of riparian thinning on shade, light, and stream temperature, we employed a manipulative field experiment following a replicated Before-After-Control-Impact (BACI) design in three watersheds in the redwood forests of northern California, USA. Thinning treatments were intended to reduce canopy closure or basal area within the riparian zone by up to 50% on both sides of the stream channel along a 100–200 m stream reach. We found that responses to thinning ranged widely depending on the intensity of thinning treatments. In the watersheds with more intensive treatments, thinning reduced shade, increased light, and altered stream thermal regimes in thinned and downstream reaches. Thinning shifted thermal regimes by increasing maximum temperatures, thermal variability, and the frequency and duration of elevated temperatures. These thermal responses occurred primarily during summer but also extended into spring and fall. Longitudinal profiles indicated that increases in temperature associated with thinning frequently persisted downstream, but downstream effects depended on the magnitude of upstream temperature increases. Model selection analyses indicated that local changes in shade as well as upstream thermal conditions and proximity to upstream treatments explained variation in stream temperature responses to thinning. In contrast, in the study watershed with less intensive thinning, smaller changes in shade and light resulted in minimal stream temperature responses. Collectively, our data shed new light on the stream thermal responses to riparian thinning. These results provide relevant information for managers considering thinning as a viable restoration strategy for second-growth riparian forests.
Journal Article
New technology for an ancient fish: A lamprey life cycle modeling tool with an R Shiny application
by
Benjamin, Joseph R.
,
Dunham, Jason B.
,
Gomes, Dylan G. E.
in
Adults
,
Animal life cycles
,
Animals
2025
Lampreys (Petromyzontiformes) are an ancient group of fishes with complex life histories. We created a life cycle model that includes an R Shiny interactive web application interface to simulate abundance by life stage. This will allow scientists and managers to connect available demographic information in a framework that can be applied to questions regarding lamprey biology and conservation. We used Pacific lamprey ( Entosphenus tridentatus ) as a case study to highlight the utility of this model. We applied a global sensitivity analysis to explore the importance of individual life stage parameters to overall population size, and to better understand the implications of existing gaps in knowledge. We also provided example analyses of selected management scenarios (dam passage, fish translocations, and hatchery additions) influencing Pacific lamprey in fresh water. These applications illustrate how the model can be applied to inform conservation efforts. This tool will provide new capabilities for users to explore their own questions about lamprey biology and conservation. Simulations can hone hypotheses and predictions, which can then be empirically tested in the real world.
Journal Article
Flow regime, temperature, and biotic interactions drive differential declines of trout species under climate change
by
Neville, Helen M
,
Luce, Charles H
,
Young, Michael K
in
Animals
,
Biological Sciences
,
Climate Change
2011
Broad-scale studies of climate change effects on freshwater species have focused mainly on temperature, ignoring critical drivers such as flow regime and biotic interactions. We use downscaled outputs from general circulation models coupled with a hydrologic model to forecast the effects of altered flows and increased temperatures on four interacting species of trout across the interior western United States (1.01 million km2), based on empirical statistical models built from fish surveys at 9,890 sites. Projections under the 2080s A1B emissions scenario forecast a mean 47% decline in total suitable habitat for all trout, a group of fishes of major socioeconomic and ecological significance. We project that native cutthroat trout Oncorhynchus clarkii, already excluded from much of its potential range by nonnative species, will lose a further 58% of habitat due to an increase in temperatures beyond the species’ physiological optima and continued negative biotic interactions. Habitat for nonnative brook trout Salvelinus fontinalis and brown trout Salmo trutta is predicted to decline by 77% and 48%, respectively, driven by increases in temperature and winter flood frequency caused by warmer, rainier winters. Habitat for rainbow trout, Oncorhynchus mykiss, is projected to decline the least (35%) because negative temperature effects are partly offset by flow regime shifts that benefit the species. These results illustrate how drivers other than temperature influence species response to climate change. Despite some uncertainty, large declines in trout habitat are likely, but our findings point to opportunities for strategic targeting of mitigation efforts to appropriate stressors and locations.
Journal Article
Impacts of climatic variation on trout: a global synthesis and path forward
by
Al-Chokhachy, Robert
,
Kovach, Ryan P.
,
Dunham, Jason B.
in
age structure
,
Analysis
,
Aquatic ecosystems
2016
Despite increasing concern that climate change may negatively impact trout—a globally distributed group of fish with major economic, ecological, and cultural value—a synthetic assessment of empirical data quantifying relationships between climatic variation and trout ecology does not exist. We conducted a systematic review to describe how temporal variation in temperature and streamflow influences trout ecology in freshwater ecosystems. Few studies (
n
= 42) have quantified relationships between temperature or streamflow and trout demography, growth, or phenology, and nearly all estimates (96 %) were for
Salvelinus fontinalis
and
Salmo trutta
. Only seven studies used temporal data to quantify climate-driven changes in trout ecology. Results from these studies were beset with limitations that prohibited quantitatively rigorous meta-analysis, a concerning inadequacy given major investment in trout conservation and management worldwide. Nevertheless, consistent patterns emerged from our synthesis, particularly a positive effect of summer streamflow on trout demography and growth; 64 % of estimates were positive and significant across studies, age classes, species, and locations, highlighting that climate-induced changes in hydrology may have numerous consequences for trout. To a lesser degree, summer and fall temperatures were negatively related to population demography (51 and 53 % of estimates, respectively), but temperature was rarely related to growth. To address limitations and uncertainties, we recommend: (1) systematically improving data collection, description, and sharing; (2) appropriately integrating climate impacts with other intrinsic and extrinsic drivers over the entire lifecycle; (3) describing indirect consequences of climate change; and (4) acknowledging and describing intrinsic resiliency.
Journal Article
A Streamflow Permanence Classification Model for Forested Streams That Explicitly Accounts for Uncertainty and Extrapolation
by
Burnett, Jonathan D
,
Jaeger, Kristin L
,
Staab, Brian
in
Annual precipitation
,
Classification
,
Creeks & streams
2025
Accurate mapping of headwater streams and their flow status has important implications for understanding and managing water resources and land uses. However, accurate information is rare, especially in rugged, forested terrain. We developed a streamflow permanence classification model for forested lands in western Oregon using the latest light detection and ranging‐derived hydrography published in the National Hydrography Dataset. Models were trained using 2,518 flow/no flow field observations collected in late summer 2019–2021 across headwaters of 129 sub‐watersheds. The final model, the Western Oregon WeT DRy model, used Random Forest and 13 environmental covariates for classifying every 5‐m stream sub‐reach across 426 sub‐watersheds. The most important covariates were annual precipitation and drainage area. Model output included probabilities of late summer surface flow presence and were subsequently categorized into three streamflow permanence classes—Wet, Dry, and Ambiguous. Ambiguous denoted model probabilities and associated prediction intervals that extended over the 50% classification threshold between wet and dry. Model accuracy was 0.83 for sub‐watersheds that contained training data and decreased to 0.67 for sub‐watersheds that did not have observations of late summer surface flow. The model identified where predictions extrapolated beyond the domain characterized by the training data. The combination of spatially continuous estimates of late summer streamflow status along with uncertainty and extrapolation estimates provide critical information for strategic project planning and designing additional field data collection.
Journal Article
A riverscape approach reveals downstream propagation of stream thermal responses to riparian thinning at multiple scales
by
Roon, David A.
,
Torgersen, Christian E.
,
Dunham, Jason B.
in
coast redwood forests
,
cumulative effects
,
downstream propagation
2021
Hydrological connectivity in river networks influences their response to environmental changes as local effects may extend downstream via flowing water. For example, localized changes in riparian forest conditions can affect stream temperatures, and these effects may propagate downstream. However, studies evaluating stream temperature responses to riparian forest management have not considered cumulative effects across entire watersheds. Improved understanding at these scales is needed because land managers are increasingly required to consider broad‐scale consequences of their actions. To address this question, we deployed a high‐density network of sensors across watersheds to examine stream temperature responses to experimental thinning of riparian forests. A riverscape approach that combined high‐resolution data throughout the study watersheds made it possible to examine local and downstream patterns of stream temperature at multiple spatial and temporal scales. We found that local responses of temperature to thinning varied widely depending on the intensity of thinning treatments. Downstream propagation of local responses extended from 100 m to over 1000 m and depended on the magnitude of the local response. We characterized these responses as a series of waveforms. In the watersheds with more intensive thinning, thermal responses occurred most often as an extended pulse where downstream increases in temperature attenuated gradually at variable distances. Although we observed no evidence of cumulative effects associated with thinning at the downstream extent of stream networks, effects emerged where thinning treatments were closely spaced (<400 m apart) and local warming did not dissipate with downstream distance. In a watershed with less intensive thinning, there was either no response or a localized pulse with no downstream propagation. Collectively, these patterns suggest that riparian forest thinning influenced downstream thermal conditions to varying extents depending on the intensity, scale, and spatial proximity of treatments. We found that a multiscale riverscape approach and conceptual framework based on contrasting waveforms provided a foundation for understanding the cumulative watershed effects of riparian thinning. The approach developed here can be adapted more broadly when evaluating downstream propagation of local changes in river networks and has direct implications for guiding restoration in riparian ecosystems.
Journal Article
Controlling invasive fish in fluctuating environments: Model analysis of common carp (Cyprinus carpio) in a shallow lake
by
Pearson, James B.
,
Dunham, Jason B.
,
Bellmore, J. Ryan
in
Aquatic ecosystems
,
Biodiversity
,
biomass
2022
Climate change can act to facilitate or inhibit invasions of non‐native species. Here, we address the influence of climate change on control of non‐native common carp (hereafter, carp), a species recognized as one of the “world's worst” invaders across the globe. Control of this species is exceedingly difficult, as it exhibits rapid population growth and compensatory density dependence. In many locations where carp have invaded, however, climate change is altering hydrologic regimes and may influence population demography and efficacy of human control efforts. To further evaluate these processes, we employed a modified version of an age‐based population model (CarpMOD), to investigate how hydrologic variability (change in lake area) influences carp population dynamics and control efforts in Malheur Lake, southeastern Oregon, USA. We explored how changes in lake area influence carp populations under three control scenarios: (1) no carp removal, (2) carp removal during low water years, and (3) carp removal during all years. Lake area fluctuations strongly influenced carp populations and the efficacy of carp control. Modeled carp biomass peaked when the lake transitioned from high‐to‐low levels, and carp biomass declined when lake area transitioned from low‐to‐high. Removing carp during low water periods—when fish were concentrated into a smaller area—reduced carp populations almost as much as removing carp every year. Furthermore, the effectiveness of control efforts increased with the prevalence and severity of low lake conditions (longer durations of very low lake area). These simulations suggest that a drier climate may naturally decrease carp populations and make them easier to control. However, drier conditions may also negatively affect aquatic ecosystems and potentially have a greater impact than non‐native species themselves.
Journal Article
Resilience of terrestrial and aquatic fauna to historical and future wildfire regimes in western North America
by
Flitcroft, Rebecca L.
,
Long, Jonathan W.
,
Jager, Henriette I.
in
Aquatic animals
,
Aquatic ecosystems
,
Aquatic environment
2021
Wildfires in many western North American forests are becoming more frequent, larger, and severe, with changed seasonal patterns. In response, coniferous forest ecosystems will transition toward dominance by fire‐adapted hardwoods, shrubs, meadows, and grasslands, which may benefit some faunal communities, but not others. We describe factors that limit and promote faunal resilience to shifting wildfire regimes for terrestrial and aquatic ecosystems. We highlight the potential value of interspersed nonforest patches to terrestrial wildlife. Similarly, we review watershed thresholds and factors that control the resilience of aquatic ecosystems to wildfire, mediated by thermal changes and chemical, debris, and sediment loadings. We present a 2‐dimensional life history framework to describe temporal and spatial life history traits that species use to resist wildfire effects or to recover after wildfire disturbance at a metapopulation scale. The role of fire refuge is explored for metapopulations of species. In aquatic systems, recovery of assemblages postfire may be faster for smaller fires where unburned tributary basins or instream structures provide refuge from debris and sediment flows. We envision that more‐frequent, lower‐severity fires will favor opportunistic species and that less‐frequent high‐severity fires will favor better competitors. Along the spatial dimension, we hypothesize that fire regimes that are predictable and generate burned patches in close proximity to refuge will favor species that move to refuges and later recolonize, whereas fire regimes that tend to generate less‐severely burned patches may favor species that shelter in place. Looking beyond the trees to forest fauna, we consider mitigation options to enhance resilience and buy time for species facing a no‐analog future. Wildfires in many western North American forests are becoming more frequent, larger, and more severe due to changes in climate and past fire suppression. We propose a new life history framework for wildlife response to frequency, intensity, and patch size of wildfire disturbances. Finally, we consider forest management strategies that might enhance the resilience of wildlife under transient future conditions.
Journal Article