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"Elliott, Matt"
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Differential glycosylation of envelope gp120 is associated with differential recognition of HIV-1 by virus-specific antibodies and cell infection
by
Novak, Jan
,
Moldoveanu, Zina
,
Czernekova, Lydie
in
Acquired immune deficiency syndrome
,
AIDS
,
Grants
2014
Background
HIV-1 entry into host cells is mediated by interactions between the virus envelope glycoprotein (gp120/gp41) and host-cell receptors.
N
-glycans represent approximately 50% of the molecular mass of gp120 and serve as potential antigenic determinants and/or as a shield against immune recognition. We previously reported that
N
-glycosylation of recombinant gp120 varied, depending on the producer cells, and the glycosylation variability affected gp120 recognition by serum antibodies from persons infected with HIV-1 subtype B. However, the impact of gp120 differential glycosylation on recognition by broadly neutralizing monoclonal antibodies or by polyclonal antibodies of individuals infected with other HIV-1 subtypes is unknown.
Methods
Recombinant multimerizing gp120 antigens were expressed in different cells, HEK 293T, T-cell, rhabdomyosarcoma, hepatocellular carcinoma, and Chinese hamster ovary cell lines. Binding of broadly neutralizing monoclonal antibodies and polyclonal antibodies from sera of subtype A/C HIV-1-infected subjects with individual gp120 glycoforms was assessed by ELISA. In addition, immunodetection was performed using Western and dot blot assays. Recombinant gp120 glycoforms were tested for inhibition of infection of reporter cells by SF162 and YU.2 Env-pseudotyped R5 viruses.
Results
We demonstrated, using ELISA, that gp120 glycans sterically adjacent to the V3 loop only moderately contribute to differential recognition of a short apex motif GPGRA and GPGR by monoclonal antibodies F425 B4e8 and 447-52D, respectively. The binding of antibodies recognizing longer peptide motifs overlapping with GPGR epitope (268 D4, 257 D4, 19b) was significantly altered. Recognition of gp120 glycoforms by monoclonal antibodies specific for other than V3-loop epitopes was significantly affected by cell types used for gp120 expression. These epitopes included CD4-binding site (VRC03, VRC01, b12), discontinuous epitope involving V1/V2 loop with the associated glycans (PG9, PG16), and an epitope including V3-base-, N332 oligomannose-, and surrounding glycans-containing epitope (PGT 121). Moreover, the different gp120 glycoforms variably inhibited HIV-1 infection of reporter cells.
Conclusion
Our data support the hypothesis that the glycosylation machinery of different cells shapes gp120 glycosylation and, consequently, impacts envelope recognition by specific antibodies as well as the interaction of HIV-1 gp120 with cellular receptors. These findings underscore the importance of selection of appropriately glycosylated HIV-1 envelope as a vaccine antigen.
Journal Article
Investments in social ties, risk sharing, and inequality
2021
This article investigates stable and efficient networks in the context of risk sharing, when it is costly to establish and maintain relationships that facilitate risk sharing. We find a novel trade-off between efficiency and equality: the most stable efficient networks also generate the most inequality. We then suppose that individuals can be split into groups, assuming that incomes across groups are less correlated than within a group but relationships across groups are more costly to form. The tension between efficiency and equality extends to these correlated income structures. More-central agents have stronger incentives to form across-group links, reaffirming the efficiency benefits of having highly central agents. Our results are robust to many extensions. In general, endogenously formed networks in the risk-sharing context tend to exhibit highly asymmetric structures, which can lead to stark inequalities in consumption levels.
Journal Article
The Distribution and Habitat of Centruroides hentzi (Banks) (Scorpiones, Buthidae) in Georgia
2012
Field collections made by the authors in pineland ecosystems in southern Georgia during 2011 significantly expand the previously published range limits of the scorpion Centruroides hentzi in Georgia. We commonly found specimens beneath the exfoliating bark of Pinus palustris (Longleaf Pine) and P. elliottii (Slash Pine) snags, stumps, and logs in sandhills and pine flatwoods habitats, documenting this scorpion from 50 sites in 34 south Georgia counties, and extending the known range of C. hentzi 150 km north (from near Waycross, Ware County, GA) to Statesboro, Bulloch County, GA. Our collections indicate that the species is widespread in pine-dominated uplands throughout much of the lower and middle Coastal Plain of southern Georgia. We comment on the life history, ecology, and habitat requirements of the species based on this survey and the existing literature. In Georgia, C. hentzi is a characteristic associate of Longleaf Pine and Slash Pine ecosystems, is often locally abundant, and is part of an arthropod-vertebrate food web that includes the endangered Picoides borealis (Red-cockaded Woodpecker).
Journal Article
Controlling the COD removal of an A-stage pilot study with instrumentation and automatic process control
2017
The pursuit of fully autotrophic nitrogen removal via the anaerobic ammonium oxidation (anammox) pathway has led to an increased interest in carbon removal technologies, particularly the A-stage of the adsorption/bio-oxidation (A/B) process. The high-rate operation of the A-stage and lack of automatic process control often results in wide variations of chemical oxygen demand (COD) removal that can ultimately impact nitrogen removal in the downstream B-stage process. This study evaluated the use dissolved oxygen (DO) and mixed liquor suspended solids (MLSS) based automatic control strategies through the use of in situ on-line sensors in the A-stage of an A/B pilot study. The objective of using these control strategies was to reduce the variability of COD removal by the A-stage and thus the variability of the effluent C/N. The use of cascade DO control in the A-stage did not impact COD removal at the conditions tested in this study, likely because the bulk DO concentration (>0.5 mg/L) was maintained above the half saturation coefficient of heterotrophic organisms for DO. MLSS-based solids retention time (SRT) control, where MLSS was used as a surrogate for SRT, did not significantly reduce the effluent C/N variability but it was able to reduce COD removal variation in the A-stage by 90%.
Journal Article
Using ancillary data to model the terrestrial distribution of gopher frogs
2023
An inherent challenge in managing rare or cryptic species is data deficiency. For this reason, ancillary data is a potentially valuable resource for generating key population estimates for priority species. We compiled ancillary commensal data collected between 1982 and 2020 during surveys of gopher tortoise (Gopherus polyphemus) burrows to estimate the terrestrial distribution of gopher frogs (Rana capito) from potential breeding wetlands. Gopher frogs were detected in gopher tortoise burrows 30‒3,879 m from identified wetlands. A global model of all records from all sites indicated that the probability of a gopher frog residing in a gopher tortoise burrow declined with increasing distance from a wetland. This pattern also held for 4 of 5 sites with a sufficient number of gopher frog detections to model independently. Based on the full data set, we estimated that 50%, 90%, and 99% of gopher frog observations occurred within 392 m, 1,019 m, and 2,752 m of the nearest wetland, respectively. Our results indicate a higher proportion of gopher frogs emigrate longer distances from wetlands than was previously reported using other methods, such as radio-telemetry. This information can directly assist with management decisions, notably the spatial extent for application of habitat management surrounding breeding wetlands. More generally, this study illustrates the capacity of ancillary data to fill data deficiencies for a rare and cryptic species and highlights the importance of these data.
Journal Article
Evaluating Growth Rates of Captive, Wild, and Reintroduced Populations of the Imperiled Eastern Indigo Snake (Drymarchon couperi)
by
Brady, Tony
,
Hyslop, Natalie L.
,
Hill, Robert L.
in
Adaptive management
,
Bayesian analysis
,
Best practice
2023
Reintroduction of species at sites where populations have been extirpated has become a common technique in wildlife conservation. To track progress towards reintroduction success, effective postrelease monitoring is needed to document vital rates of individuals and the corresponding impact on population trajectories. We assessed growth and body size in Eastern Indigo Snakes (Drymarchon couperi) using a data set from multiple projects across the species' distribution, including free-ranging wild snakes, snakes reared in captive-breeding programs, and snakes released at two reintroduction sites. We used these data to fit a von Bertalanffy growth model in a Bayesian framework to quantify differences in growth among three broad categories of snakes (wild, captive, and reintroduced), while accounting for measurement error across various projects. We also compared changes in body mass of captive-born individuals from four captive rearing facilities. Asymptotic snout–vent length across all groups was 185 cm (95% credible interval = 177–194 cm) for males and 157 cm (95% credible interval = 153–161 cm) for females. Reintroduced snakes had a higher growth coefficient than either captive or wild snakes (e.g., captive females = 1.20 [1.06–1.35] d–1; wild females = 1.22 [0.95–1.49] d–1; reintroduced females = 1.62 [1.21–2.05] d–1), indicating that current captive-breeding and rearing efforts for indigo snakes produce similar or faster growth trends compared to wild populations. Furthermore, daily changes in juvenile body weight relative to body size were similar in three of the four captive rearing facilities (mean for females at Orianne Center for Indigo Conservation = 0.57 [0.48–0.65]; Zoo Atlanta = 0.55 [0.37–0.72]; Welaka National Fish Hatchery = 0.55, [0.36–0.73]; Auburn University = 0.39 [0.21–0.58]). Long-term project success for indigo snake reintroductions will depend on continuing to implement best practices in an adaptive management framework.
Journal Article
Phytophthora austrocedri in Argentina and Co-Inhabiting Phytophthoras: Roles of Anthropogenic and Abiotic Factors in Species Distribution and Diversity
by
Hedley, Pete E
,
Tarabini, Manuela Mabel
,
Elliott, Matt
in
Abiotic factors
,
administrative management
,
Analysis
2020
Fil: la Manna, Ludmila Andrea. Universidad Nacional de la Patagonia \"San Juan Bosco\". Facultad de Ingeniería - Sede Esquel; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Patagonia Norte; Argentina
Journal Article
Social Investments, Informal Risk Sharing, and Inequality
2014
Working Paper No. 20669 This paper studies costly network formation in the context of risk sharing. Neighboring agents negotiate agreements as in Stole and Zwiebel (1996), which results in the social surplus being allocated according to the Myerson value. We uncover two types of inefficiency: overinvestment in social relationships within group (e.g., caste, ethnicity), but underinvestment across group. We find a novel tradeoff between efficiency and equality. Both within and across groups, inefficiencies are minimized by increasing social inequality, which results in financial inequality and increasing the centrality of the most central agents. Evidence from 75 Indian village networks is congruent with our model.
Manufacturing Returns to the U.S.A. Where has the Talent Pool Gone?
In a roundtable discussion, several executives shared their view on manufacturing making a return to the US. When asked what types of jobs are manufacturers having a hard time filling, David Sansone, Executive Director, Precision Metalforming Association Educational Foundation, said everything in the business from press operators to tool and die makers are seeing a skills gap, and much of that is due to the retirement of the baby boomers who held those positions for so long. Dan Berry, President and CEO. Manufacturing Advocacy and Growth Network, said they've had deterioration in the vocational education systems in many of their schools. Because of the negative perception of manufacturing, they've had a lack of young people interested in pursuing manufacturing careers. James Boone, Program Manager; VP, Workforce Solution, Cuyahoga Community College, said for them it's about engaging with the local schools and organizations. In addition, they ask senior managers in cooperation with their human resources department to take responsibility for recruiting on college campuses.
Trade Publication Article
Decentralized bargaining in matching markets: efficient stationary equilibria and the core
2018
This paper studies market clearing in matching markets. The model is non-cooperative, fully decentralized, and in Markov strategies. Workers and firms bargain with each other to determine who will be matched to whom and at what terms of trade. Once a worker firm pair reach agreement they exit the market. Alternative possible matches affect agents' bargaining positions. We ask when do such markets clear efficiently and find that inefficiencies mismatch and delay often feature. Mismatch occurs whenever an agent's bargaining position is at risk of deteriorating. Delay occurs whenever agents expect their bargaining position to improve. Delay can be extensive and structured with vertically differentiated markets endogenously clearing from the top down.