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result(s) for
"Fernandes, Patrick"
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Distinct progenitor lineages contribute to the heterogeneity of plasmacytoid dendritic cells
by
Alberti-Servera, Llucia
,
Grajales-Reyes, Gary E.
,
Tussiwand, Roxane
in
631/250/21/1293
,
631/250/232/2058
,
631/250/232/2059
2018
Plasmacytoid dendritic cells (pDCs) are an immune subset devoted to the production of high amounts of type 1 interferons in response to viral infections. Whereas conventional dendritic cells (cDCs) originate mostly from a common dendritic cell progenitor (CDP), pDCs have been shown to develop from both CDPs and common lymphoid progenitors. Here, we found that pDCs developed predominantly from IL-7R
+
lymphoid progenitor cells. Expression of SiglecH and Ly6D defined pDC lineage commitment along the lymphoid branch. Transcriptional characterization of SiglecH
+
Ly6D
+
precursors indicated that pDC development requires high expression of the transcription factor IRF8, whereas pDC identity relies on TCF4. RNA sequencing of IL-7R
+
lymphoid and CDP-derived pDCs mirrored the heterogeneity of mature pDCs observed in single-cell analysis. Both mature pDC subsets are able to secrete type 1 interferons, but only myeloid-derived pDCs share with cDCs their ability to process and present antigen.
Tussiwand and colleagues show that pDCs develop predominantly from IL-7R
+
lymphoid progenitor cells and that mature pDCs are transcriptionally and functionally heterogenous, on the basis of their lymphoid or myeloid lineage.
Journal Article
A Sensor for the Detection of Cr (III) and Fe (III) Ions Based on “Turn Off” Mechanism of Fluorescence with Computational Studies
2022
A new and innovative fluorescent structure was constructed on Cyclotriveratrylene affiliated to Dansyl chloride (DNSC) and was used to detect Cr (III) and Fe (III) among the various cations by using spectrofluorimetric method. The characterization of the new compound was carried out using the 1H-NMR, 13C-NMR, and ESI–MS techniques. The interaction and role of DNSC-CTV with cations was reviewed. A change in the spectra of absorption directed to the conclusion that there is substantial interaction of Cr (III) and Fe (III) with DNSC-CTV. Furthermore the interaction of the ligand DNSC-CTV with the metal ions Chromium (III) and Iron (III) showed quenching in the emission spectra. Quantum yield of the complexes were calculated and the stern volmer analysis was done to deduce the quenching mechanism of fluorescence to being either static or dynamic. The molecule DNSC-CTV was further studied with the help of computational methods such as molecular docking to study the binding interactions and properties of the molecule.
Journal Article
CTV Based Sensor for the Detection of Ni2+ Ions With Real Sample Analysis Based on Mechanism of Fluorescence Along with Computational Insights
by
Fernandes, Patrick F
,
Mishra, Divya R
in
Chemical synthesis
,
Computer applications
,
Contaminants
2022
Identification and detection of harmful contaminants such as nickel and other materials from soil and water is critical necessity at the present moment. So with this motive to detect and identify harmful pollutants, a novel cyclotriveratrylene based derivative was prepared for the detection and binding of harmful pollutants which had the properties of fluorescence. The newly derivative of Cyclotriveratrylene was found to be highly sensitive and selective towards Ni2+ ions. The complexation behaviour of this newly synthesised molecule was studied in presence of transition elements. Also computational methods such as docking, molecular modelling and DFT were used to study the molecular orbitals and energies of CTG-NBEP. The detection of Ni2+ from water samples were also carried out successfully.
Journal Article
CTV Based Sensor for the Rapid Detection of Nitro Toluene With Computational Studies and Molecular Modelling
by
Mishra, Divya R
,
Kashyap, Priyanka
,
Fernandes, Patrick F
in
Aromatic compounds
,
Chemical synthesis
,
Chemicals
2022
A new tri-naphthoylated Cyclotriveratrylene molecule has been synthesized for the rapid and sensitive detection of 4-nitrotoluene (4-NT) among various nitro aromatic compounds (NACs) by using a spectrofluorimetric method. The newly derrivatized cyclotriveratrylene compound is successfully confirmed by using the available techniques of 1H-NMR, 13CNMR, and ESI–MS. This synthesised molecule is 1NC-CTV (1-Naptholy Chloride-Cyclotriveratrylene). Strong quenching in the fluorescence intensity of 1NC-CTV was observed upon the addition of 4-NT. Further quantum yield studies were carried out and by using the stern volmer it was concluded that the fluorescence quenching mechanism is dynamic or static. The molecule 1NC-CTV was further studied with the help of computational methods such as molecular docking to study the binding interactions and properties of the molecule.
Journal Article
Bridging the Gap: A Survey on Integrating (Human) Feedback for Natural Language Generation
by
Madaan, Aman
,
Bertsch, Amanda
,
Farinhas, António
in
Classification
,
Data collection
,
Datasets
2023
Natural language generation has witnessed significant advancements due to the training of large language models on vast internet-scale datasets. Despite these advancements, there exists a critical challenge: These models can inadvertently generate content that is toxic, inaccurate, and unhelpful, and existing automatic evaluation metrics often fall short of identifying these shortcomings. As models become more capable,
is an invaluable signal for evaluating and improving models. This survey aims to provide an overview of recent research that has leveraged human feedback to improve natural language generation. First, we introduce a taxonomy distilled from existing research to categorize and organize the varied forms of feedback. Next, we discuss how feedback can be described by its format and objective, and cover the two approaches proposed to use feedback (either for training or decoding): directly using feedback or training
. We also discuss existing datasets for human-feedback data collection, and concerns surrounding feedback collection. Finally, we provide an overview of the nascent field of
, which uses large language models to make judgments based on a set of principles and minimize the need for human intervention. We also release a website of this survey at
.
Journal Article
Use of bacterial inoculant in rehydrated corn grain silage
by
Rafael de Souza Pereira, Vitória Cassia
,
do Prado Paim, Tiago
,
Costa Nunes, Frederico
in
Acidity
,
Animal nutrition
,
Brazil
2024
The aim of this study was to evaluate the fermentative parameters and chemical compositions of corn grain silages rehydrated with different moisture levels, inoculated with bacteria (Lentilactobacillus hilgardii combined with Lentilactobacillus buchneri), and investigate the impact of this strategy on silage at different storage times. The study was carried out in the Animal Nutrition Laboratory, Rio Verde, Brazil. The experiment was carried out in a completely randomized design, in a triple factorial scheme, with six replications per treatment. At 30 and 40% moisture levels, the inoculant increased acidity. However, it was only at 35% moisture level that the inoculated silage achieved the pH within the appropriate range (4.16). In the silage without inoculant, the effluent loss was lower only in the silage with 30% moisture (9.11 g kg
-1
DM). The presence or absence of the inoculant does not affect the concentration of crude protein and total carbohydrates. Rehydration with 35% moisture is recommended for quality silage production. Although the inoculant does not affect the chemical composition of the silage, its use is essential to ensure a proper fermentation process, preserve the quality and also to reduce nutrient losses during the moist grain silage preparation.
Journal Article
Nutritional value and fermentative characteristics of pearl millet silage with different levels of coffee husk
by
Tavares, Valdir Botega
,
Lara, Erika Christina
,
Ítavo, Luís Carlos Vinhas
in
absorbent additives
,
AGRONOMY
,
Carbohydrates
2024
The research was conducted to test the hypothesis that the inclusion of coffee husk (Coffea sp.) would improve the fermentative characteristics and quality of pearl millet silage (Pennisetumglaucum). Thus, the objective was to assess the effect of the inclusion of different levels of coffee husk in pearl millet silage on the chemical composition, fermentative characteristics and degradability in situ of silage. The experimental design used was completely randomized and the treatments consisted of the silage of the whole pearl millet plant with the inclusion of increasing levels of coffee husk: 0%, 7%, 14% and 21%, based on natural matter. After 60 days of fermentation, the silages were evaluated for chemical characteristics, fermentative, degradability in situ dry matter (DM) and neutral detergent fiber (NDF). The inclusion of coffee husk did not alter (P > 0.05) the contents of crude protein (11.94%), NDF (44.89%) and total digestible nutrients (65.09%). There were increases in the concentrations of DM and fiber in acid detergent, accompanied by a reduction in the concentrations of mineral matter and ether extract, as the proportion of coffee husks in silages increased. There was an increase in the lignin content up to the level of 7.59% inclusion of the coffee husk. There was no effect of the inclusion of the coffee husk on the pH of the silage (3.60). However, the inclusion of coffee husk resulted in a reduction in temperature, gas losses, and degradability in situ of silage DM and NDF. It is recommended to include coffee husk up to the level of 14.0% of the natural matter to improve the fermentation pattern and the quality of the pearl millet silage. RESUMO: A pesquisa foi conduzida para testar a hipótese de que a inclusão de casca de café (Coffea sp.) melhoraria as características fermentativas e a qualidade da silagem de milheto (Pennisetum glaucum). Assim, objetivou-se avaliar o efeito da inclusão de diferentes níveis da casca de café na ensilagem de milheto sobre a composição química, características fermentativas e degradabilidade in situ da silagem. O delineamento experimental utilizado foi inteiramente casualizado e os tratamentos constituíram-se pela silagem da planta inteira de milheto com a inclusão de níveis crescentes de casca de café: 0%, 7%, 14% e 21%, com base na matéria natural. Após 60 dias de fermentação, as silagens foram avaliadas quanto às características químicas, fermentativas, degradabilidade in situ da matéria seca (MS) e da fibra em detergente neutro (FDN). A inclusão da casca de café não alterou (P > 0,05) os teores de proteína bruta (11,94%), FDN (44,89%) e nutrientes digestíveis totais (65,09%). Houve aumentos nas concentrações de MS e fibra em detergente ácido, acompanhados de uma redução nas concentrações de matéria mineral e extrato etéreo, à medida que se aumentou a participação da casca de café nas silagens. Houve um aumento no teor de lignina até o nível de 7,59% de inclusão da casca de café. Não houve efeito da inclusão da casca de café sobre o pH da silagem (3,60). Entretanto, a inclusão de casca de café acarretou na redução da temperatura, perdas por gases, degradabilidade in situ da MS e FDN da silagem. Recomenda-se a inclusão de casca de café até o nível de 14,0% da matéria natural para melhoria do padrão de fermentação e da qualidade da silagem de milheto.
Journal Article
Assessing the Role of Context in Chat Translation Evaluation: Is Context Helpful and Under What Conditions?
2024
Despite the recent success of automatic metrics for assessing translation quality, their application in evaluating the quality of machine-translated chats has been limited. Unlike more structured texts like news, chat conversations are often unstructured, short, and heavily reliant on contextual information. This poses questions about the reliability of existing sentence-level metrics in this domain as well as the role of context in assessing the translation quality. Motivated by this, we conduct a meta-evaluation of existing automatic metrics, primarily designed for structured domains such as news, to assess the quality of machine-translated chats. We find that reference-free metrics lag behind reference-based ones, especially when evaluating translation quality in out-of-English settings. We then investigate how incorporating conversational contextual information in these metrics for sentence-level evaluation affects their performance. Our findings show that augmenting neural learned metrics with contextual information helps improve correlation with human judgments in the reference-free scenario and when evaluating translations in out-of-English settings. Finally, we propose a new evaluation metric,
, that utilizes bilingual context with a large language model (LLM) and further validate that adding context helps even for LLM-based evaluation metrics.
Journal Article
Comparison of mathematical models to estimate live weight through heart girth in growing Pelibuey sheep
by
Camacho-Perez, Enrique
,
Chaves-Gurgel, Antonio-Leandro
,
Chay-Canul, Alfonso-Juventino
in
alternative forages
,
Animal growth
,
Animal models
2023
Background: Assessment of animal growth based on live weight (LW) in traditional sheep production systems is limited by the high cost of purchase and maintenance of livestock scales. Objective: To develop and evaluate equations for LW prediction using heart girth (HG) in growing Pelibuey sheep. Methods: A dataset (n=415) of clinically healthy male Pelibuey sheep from two months to one year of age, with an average LW of 25.96 ± 10.25 kg and HG of 68.31 ± 10.53 cm, were used. Three equations were evaluated: LW (kg) = −37.70 + 0.93 × HG (Eq. 1); LW (kg) = −1.74 + 0.19 × HG + 0.008 × HG2 (Eq. 2); and LW (kg) = 0.003 × HG2.68 (Eq. 3). Results: The correlation coefficient between LW and HG was r = 0.94 (p<0.001). The three equations showed a high concordance correlation coefficient (CCCs≥0.97). However, the random error was the main component of the mean square partition of the prediction error (≥82.78%) only for Eqs. 1 and 2. The test for parameter identity (intercept=0; slope=1) was accepted only for Eq. 2 (p>0.05). On the other hand, for Eqs. 1 and 3 the intercept was different from zero and the slope was different from one (p<0.05). Conclusion: The second-degree equation accurately and precisely estimated body weight of growing Pelibuey sheep using the HG as a sole predictor variable.
Journal Article
Addition of grape marc improves the silage of aerial parts of cassava plant
by
Nunes-Lista, Fabio
,
Antonio-Leandro Chaves-Gurgel
,
Luís-Carlos Vinhas-Ítavo
in
agroindustrial residue
,
bagazo de uva
,
bagaço de uva
2023
Background: Although it is possible to preserve the aerial part of cassava in the form of silage, as demonstrated in previous studies, its low dry matter content can result in undesirable fermentation and increased effluent losses during silage, leading to a reduction in the final quality of the silage. A possible way to get around this problem would consist in mixing this silage with dehydrated by-products from the agroindustry. Objective: To evaluate the addition of dehydrated grape marc (DGM) to a silage of aerial parts of cassava (Manihot esculenta, Crantz) on the chemical composition, degradability and in vitro gas production of silage. Methods: A completely randomized experimental design was used, with two treatments: (I) silage of the aerial part of cassava without additive; (II) silage of the aerial part of cassava added with 10% dehydrated grape marc (DGM) in the natural matter, as an additive. After 30 days of fermentation, silages were evaluated to estimate the contents of dry matter (DM), crude protein (CP), ether extract (EE), neutral detergent fiber (NDF), total digestible nutrients (TDN), as well as pH, in vitro degradability, and cumulative gas production by semi-automatic in vitro gas production. Results: Addition of DGM did not affect CP, EE, NDF, nor TDN levels in silage. The DGM, however, promoted an increase in DM content (32.61 vs 30.31%) and a reduction in pH (4.00 vs 4.75) of the silage. The silage that received DGM presented higher degradability coefficients of soluble and potentially degradable fractions, which led to higher values of potential and effective degradability. Similarly, DGM promoted a reduction in particle colonization time (6.74 vs 10.01 h) and increased cumulative gas production (62.03 vs 57.82 mL/g DM). Conclusion: Addition of 10% dehydrated grape marc in the silage of aerial parts of cassava can be useful to reduce pH and increase dry matter contents of the silage.
Journal Article