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The 2010 Deepwater Horizon oil-spill exposed the microbes of Gulf of Mexico to unprecedented amount of oil. Conclusive evidence of the underlying molecular mechanism(s) on the negative effects of oil exposure on certain phytoplankton species such as Thalassiosira pseudonana is still lacking, curtailing our understanding of how oil spills alter community composition. We performed experiments on model diatom T. pseudonana to understand the mechanisms underpinning observed reduced growth and photosynthesis rates during oil exposure. Results show severe impairment to processes upstream of photosynthesis, such as light absorption, with proteins associated with the light harvesting complex damaged while the pigments were unaffected. Proteins associated with photosynthetic electron transport were also damaged, severely affecting photosynthetic apparatus and depriving cells of energy and carbon for growth. Negative growth effects were alleviated when an organic carbon source was provided. Further investigation through proteomics combined with pathway enrichment analysis confirmed the above findings, while highlighting other negatively affected processes such as those associated with ferroxidase complex, high-affinity iron-permease complex, and multiple transmembrane transport. We also show that oxidative stress is not the primary route of negative effects, rather secondary. Overall, this study provides a mechanistic understanding of the cellular damage that occurs during oil exposure to T. pseudonana .

Sinking marine oil snow was found to be a major mechanism in the transport of spilled oil from the surface to the deep sea following the Deepwater Horizon (DwH) oil spill. Marine snow formation is primarily facilitated by extracellular polymeric substances (EPS), which are mainly composed of proteins and carbohydrates secreted by microorganisms. While numerous bacteria have been identified to degrade oil, there is a paucity of knowledge on bacteria that produce EPS in response to oil and Corexit exposure in the northern Gulf of Mexico (nGoM). In this study, we isolated bacteria from surface water of the nGoM that grow on oil or Corexit dispersant. Among the 100 strains isolated, nine were identified to produce remarkable amounts of EPS. 16S rRNA gene analysis revealed that six isolates (strains C1, C5, W10, W11, W14, W20) belong to the genus Alteromonas; the others were related to Thalassospira (C8), Aestuariibacter (C12), and Escherichia (W13a). The isolates preferably degraded alkanes (17-77%), over polycyclic aromatic hydrocarbons (0.90-23%). The EPS production was determined in the presence of a water accommodated fraction (WAF) of oil, a chemical enhanced WAF (CEWAF), Corexit, and control. The highest production of visible aggregates was found in Corexit followed by CEWAF, WAF, and control; indicating that Corexit generally enhanced EPS production. The addition of WAF and Corexit did not affect the carbohydrate content, but significantly increased the protein content of the EPS. On the average, WAF and CEWAF treatments had nine to ten times more proteins, and Corexit had five times higher than the control. Our results reveal that Alteromonas and Thalassospira, among the commonly reported bacteria following the DwH spill, produce protein rich EPS that could have crucial roles in oil degradation and marine snow formation. This study highlights the link between EPS production and bacterial oil-degrading capacity that should not be overlooked during spilled oil clearance.

American alligators ( Alligator mississippiensis ) inhabit freshwater wetlands that are vulnerable to salinization caused by anthropogenic alterations to freshwater flow, in addition to storm surges, sea level rise, and droughts. Salinization of coastal freshwater habitats is a growing concern in a changing climate due to increased frequency and intensity of storm surges and drought conditions. This study opportunistically sampled juvenile male and female wild alligators in various salinities each month excluding November, December, and January for one year at Rockefeller Wildlife Refuge in coastal Louisiana. Blood plasma biochemistry parameters including electrolyte levels were subsequently measured. In addition, levels of various renin–angiotensin–aldosterone system hormones, glucocorticoids, androgens, estrogens, and progestogens were analyzed using liquid chromatography and tandem mass spectrometry. Only males were sampled in hyperosmotic environments (> 10‰) during dry conditions in late summer 2018. In juvenile males, plasma Na + , Cl − , and the progestogen 17α,20β-dihydroxypregnenone were significantly and positively correlated with environmental salinity. However, variation in glucocorticoids, androgens, and estrogens were not associated with hypersaline water while sex steroids showed significant seasonal variation. This study demonstrated significant correlation of environmental salinity with electrolyte levels and a sex steroid in wild juvenile alligators, and to our knowledge represents the first measurement of 17α,20β-dihydroxypregnenone in alligators.

Hurricane Harvey (category 4 storm) made landfall along the coast of Texas (USA) and then stalled out over Texas and Louisiana, releasing 1.29 x 1011 m3 of precipitation over 5 days. This caused extensive flooding that elevated freshwater river discharge and land runoff into Galveston Bay and eventually into the Gulf of Mexico. The floodwaters delivered a significant influx of terrigenous dissolved organic matter, organic pollutants and nutrients along with terrestrial and freshwater associated microbes. Over the 24 days following the flooding event, samples were collected on five cruises across Galveston Bay from the mouth of the San Jacinto River (Houston, TX) to the Gulf of Mexico. Parameters measured for this study include: water quality (temperature, salinity, pH and dissolved oxygen), nutrients (NO3-, NO2-, NH4+, Pi, and HSiO3-), polycyclic aromatic hydrocarbons, pharmaceuticals (cotinine, carbamazepine, carbamazepine-epoxide, and prednisone), biocide (imidacloprid), dissolved organic carbon, lignin phenols, bacteria and the eukaryotic community (16S and 18S rRNA genes). In the week after the flood event, bay-wide salinities decreased to 0-5 compared to the higher pre-Harvey salinities of 20-30 (recorded 5 days before the flood). Water treatment facilities and petrochemical plants were compromised due to the heavy flooding in the region. This led to increased concentrations of nutrients, polycyclic aromatic hydrocarbons, pharmaceuticals and biocides across Galveston Bay immediately following the storm. In the 4 weeks following the storm, concentrations of nutrients and organic pollutants began to decrease coinciding with rising salinities as the freshwater was flushed into the Gulf of Mexico and seawater began moving back into the Bay. Successive blooms of chlorophytes, diatoms, and dinoflagellates occurred similar to post-storm communities from past hurricanes that have impacted estuarine systems along the Gulf of Mexico. The eukaryotic community changed substantially following Harvey and did not recover to pre-Harvey conditions during our study period, suggesting a longer recovery time compared to the prokaryotes. Although the water quality parameters and microbial community showed signs of returning to pre-Harvey conditions within the month following the flood event, long-term impacts need to be measured in the years following the flood.

Understanding trophic relationships within artificial reef communities, especially those of the most numerically abundant fish, provides value to ecologists and managers looking to prioritize healthy food webs. Here we elucidate the trophic interactions of three common fish species on high relief (> 5 m) and low relief (< 5 m) artificial reefs in the northwestern Gulf of Mexico. Biomarkers including stable isotopes, (δ13C, δ15N, and δ34S), and essential fatty acids (18:2n-6, 18:3n-3, 18:4n-3, 20:4n-6, 20:5n-3, 22:5n3, and 22:6n-3) were analyzed within muscle and liver tissue. Species-specific comparisons among tomtate (Haemulon aurolineatum), pigfish (Orthopristis chrysoptera), and red snapper (Lutjanus campechanus), revealed differences in biomarkers within muscle tissue (long-term) namely δ13C, δ15N, δ34S, EPA (20:5n-3), and DHA (22:6n-3). However, using liver tissue (short-term) significant differences existed among a fewer number of biomarkers (δ15N, δ34S, and EPA) among the three species, indicating increasing trophic similarity. Red snapper collected from low relief reefs had higher δ15N values than those on high relief reefs which may be due to higher forage trophic level due to the lack of co-occurring congeners. This study highlights the importance of inter-specific food web observations that aid in the interpretation of the complex trophic relationships occurring on artificial reefs.

Nano- and microplastics (NMPs) in waterways reflect the impact of anthropogenic activities. This study examined spatial variations in the presence and types of NMPs in Galveston Bay (Texas, USA) surface waters and eastern oysters (Crassostrea virginica). The results reveal most MPs carried by surface waters are fibers > films > fragments. Up to 200 MPs were present in individual oysters [=1.88 (± 0.22 SE) per g wet weight]. Oyster health, based on condition index, varied spatially, but was not correlated with MP load. Based on attenuated total reflectance—Fourier-transform infrared spectroscopy, polyamide and polypropylene were frequently found in waters in the upper bay while ethylene propylene and polyethylene terephthalate were more common in the lower parts of the bay. Pyrolysis–gas chromatography–mass spectrometry revealed a very large range in concentrations of NMPs, from 28 to 10,925 µg ∑NMP/g wet weight (or 172 to 67,783 µg ∑NMP/g dry weight) in oysters. This chemical analysis revealed four main types of plastics present in oysters regardless of location: polypropylene, nylon 66, polyethylene and styrene butadiene rubber. Based on this finding, the average daily intake of NMPs estimated for adult humans is 0.85 ± 0.45 mg NMPs/Kg of body weight/day or a yearly intake of 310 ± 164 mg NMPs/Kg of body weight/year. These findings reveal higher body burdens of plastics in oysters are revealed by the chemical analysis relative to the traditional approach; this is not unexpected given the higher sensitivity and selectivity of mass spectrometry and inclusion of the nanoplastic particle range (i.e., <1 mm) in the sample preparation and analysis.

Marine snow was implicated in the transport of oil to the seafloor during the Deepwater Horizon oil spill, but the exact processes remain controversial. In this study, we investigated the concentrations and distributions of the 16 USEPA priority polycyclic aromatic hydrocarbons (PAHs) in marine snow aggregates collected during a mesocosm experiment. Seawater only, oil in a water accommodated fraction (WAF), and Corexit-enhanced WAF (DCEWAF) were incubated for 16 d. Both WAF and DCEWAF aggregates were enriched in heavy molecular weight PAHs but depleted in naphthalene. DCEWAF aggregates had 2.6 times more total 16 PAHs than the WAF (20.5 vs. 7.8 µg/g). Aggregates in the WAF and DCEWAF incorporated 4.4% and 19.3%, respectively of the total PAHs in the mesocosm tanks. Our results revealed that marine snow sorbed and scavenged heavy molecular weight PAHs in the water column and the application of Corexit enhanced the incorporation of PAHs into the sinking aggregates.

The metabolic modeling community has curated information from five models to create the most comprehensive model of human metabolism to date. Multiple models of human metabolism have been reconstructed, but each represents only a subset of our knowledge. Here we describe Recon 2, a community-driven, consensus 'metabolic reconstruction', which is the most comprehensive representation of human metabolism that is applicable to computational modeling. Compared with its predecessors, the reconstruction has improved topological and functional features, including ∼2× more reactions and ∼1.7× more unique metabolites. Using Recon 2 we predicted changes in metabolite biomarkers for 49 inborn errors of metabolism with 77% accuracy when compared to experimental data. Mapping metabolomic data and drug information onto Recon 2 demonstrates its potential for integrating and analyzing diverse data types. Using protein expression data, we automatically generated a compendium of 65 cell type–specific models, providing a basis for manual curation or investigation of cell-specific metabolic properties. Recon 2 will facilitate many future biomedical studies and is freely available at http://humanmetabolism.org/ .

Hurricane Harvey was the wettest hurricane in US history bringing record rainfall and widespread flooding in Houston, TX. The resulting storm- and floodwaters largely emptied into the Galveston Bay. Surface water was collected from 10 stations during five cruises to investigate the concentrations and sources of 16 priority polycyclic aromatic hydrocarbons (PAHs), and relative abundances of PAH-degrading bacteria. Highest PAH levels (102–167 ng/L) were detected during the first sampling event, decreasing to 36–69 ng/L within a week. Four sites had elevated concentrations of carcinogenic benzo[a]pyrene that exceeded the Texas Standard for Surface Water threshold. The highest relative abundances of known PAH-degrading bacteria Burkholderiaceae , Comamonadaceae , and Sphingomonadales were detected during the first and second sampling events. PAH origins were about 60% pyrogenic, 2% petrogenic, and the remainder of mixed sources. This study improves our understanding on the fate, source, and distributions of PAHs in Galveston Bay after an extreme flooding event.

Nano- and microplastics (NMPs) in waterways reflect the impact of anthropogenic activities. This study examined spatial variations in the presence and types of NMPs in Galveston Bay (Texas, USA) surface waters and eastern oysters (Crassostrea virginica). The results reveal most MPs carried by surface waters are fibers > films > fragments. Up to 200 MPs were present in individual oysters [=1.88 (± 0.22 SE) per g wet weight]. Oyster health, based on condition index, varied spatially, but was not correlated with MP load. Based on attenuated total reflectance—Fourier-transform infrared spectroscopy, polyamide and polypropylene were frequently found in waters in the upper bay while ethylene propylene and polyethylene terephthalate were more common in the lower parts of the bay. Pyrolysis–gas chromatography–mass spectrometry revealed a very large range in concentrations of NMPs, from 28 to 10,925 µg ∑NMP/g wet weight (or 172 to 67,783 µg ∑NMP/g dry weight) in oysters. This chemical analysis revealed four main types of plastics present in oysters regardless of location: polypropylene, nylon 66, polyethylene and styrene butadiene rubber. Based on this finding, the average daily intake of NMPs estimated for adult humans is 0.85 ± 0.45 mg NMPs/Kg of body weight/day or a yearly intake of 310 ± 164 mg NMPs/Kg of body weight/year. These findings reveal higher body burdens of plastics in oysters are revealed by the chemical analysis relative to the traditional approach; this is not unexpected given the higher sensitivity and selectivity of mass spectrometry and inclusion of the nanoplastic particle range (i.e., <1 mm) in the sample preparation and analysis.