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result(s) for
"Joseph, Deepthi"
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Structural basis of norepinephrine recognition and transport inhibition in neurotransmitter transporters
2021
Norepinephrine is a biogenic amine neurotransmitter that has widespread effects on alertness, arousal and pain sensation. Consequently, blockers of norepinephrine uptake have served as vital tools to treat depression and chronic pain. Here, we employ the
Drosophila melanogaster
dopamine transporter as a surrogate for the norepinephrine transporter and determine X-ray structures of the transporter in its substrate-free and norepinephrine-bound forms. We also report structures of the transporter in complex with inhibitors of chronic pain including duloxetine, milnacipran and a synthetic opioid, tramadol. When compared to dopamine, we observe that norepinephrine binds in a different pose, in the vicinity of subsite C within the primary binding site. Our experiments reveal that this region is the binding site for chronic pain inhibitors and a determinant for norepinephrine-specific reuptake inhibition, thereby providing a paradigm for the design of specific inhibitors for catecholamine neurotransmitter transporters.
The
Drosophila
dopamine transporter (dDAT) is a catecholamine neurotransmitter transporter that resembles the human norepinephrine transporter (hNET). Here the authors report X-ray structures of the dDAT in substrate-free form, norepinephrine-bound form and dDAT bound to commonly prescribed chronic pain inhibitors duloxetine, milnacipran and tramadol and shed light on the structural basis of norepinephrine recognition and transport inhibition in neurotransmitter transporters.
Journal Article
Biochemical characterization of a GDP-mannose transporter from Chaetomium thermophilum
by
Premageetha, Gowtham Thambra Rajan
,
Ramaswamy, Subramanian
,
Dhanabalan, KanagaVijayan
in
Amino acids
,
Analysis
,
Biological Transport
2023
Nucleotide Sugar Transporters (NSTs) belong to the SLC35 family (human solute carrier) of membrane transport proteins and are crucial components of the glycosylation machinery. NSTs are localized in the ER and Golgi apparatus membranes, where they accumulate nucleotide sugars from the cytosol for subsequent polysaccharide biosynthesis. Loss of NST function impacts the glycosylation of cell surface molecules. Mutations in NSTs cause several developmental disorders, immune disorders, and increased susceptibility to infection. Atomic resolution structures of three NSTs have provided a blueprint for a detailed molecular interpretation of their biochemical properties. In this work, we have identified, cloned, and expressed 18 members of the SLC35 family from various eukaryotic organisms in Saccharomyces cerevisiae . Out of 18 clones, we determined Vrg4 from Chaetomium thermophilum (CtVrg4) is a GDP-mannose transporter with an enhanced melting point temperature (T m ) of 56.9°C, which increases with the addition of substrates, GMP and GDP-mannose. In addition, we report—for the first time—that the CtVrg4 shows an affinity to bind to phosphatidylinositol lipids.
Journal Article
Optimized Deep Belief Network for Efficient Fault Detection in Induction Motor
by
Katta, Pradeep
,
Karunanithi, K.
,
Raja, S. P.
in
Algorithms
,
ant colony algorithm
,
Ant colony optimization
2024
Numerous industrial applications depend heavily on induction motors and their malfunction causes considerable financial losses. Induction motors in industrial processes have recently expanded dramatically in size, and complexity of defect identification and diagnostics for such systems has increased as well. As a result, research has concentrated on developing novel methods for the quick and accurate identification of induction motor problems.In response to these needs, this paper provides an optimised algorithm for analysing the performance of an induction motor. To analyse the operation of induction motors, an enhanced methodology on Deep Belief Networks (DBN) is introduced for recovering properties from the sensor identified vibration signals. Restricted Boltzmann Machine (RBM) is stacked utilizing multiple units of DBN model, which is then trained adopting Ant colony algorithm.An innovative method of feature extraction for autonomous fault analysis in manufacturing is provided by experimental investigations utilising vibration signals and overall accuracy of 99.8% is obtained, which therefore confirms the efficiency of DBN architecture for features extraction.
Journal Article
Combined Transcriptomics and Chemical-Genetics Reveal Molecular Mode of Action of Valproic acid, an Anticancer Molecule using Budding Yeast Model
2016
Valproic acid (VA) is a pharmacologically important histone deacetylase inhibitor that recently garnered attention as an anticancer agent. Since the molecular mechanisms behind the multiple effects of VA are unclear, this study was aimed to unravel the comprehensive cellular processes affected by VA and its molecular targets
in vivo
using budding yeast as a model organism. Interestingly, genome-wide transcriptome analysis of cells treated with VA showed differential regulation of 30% of the genome. Functional enrichment analysis of VA transcriptome evidenced alteration of various cellular processes including cell cycle, cell wall biogenesis, DNA repair, ion homeostasis, metabolism, stress response, transport and ribosomal biogenesis, etc. Moreover, our genetic screening analysis revealed VA molecular targets belonging to oxidative and osmotic stress, DNA repair, cell wall integrity, and iron homeostasis. Further, our results demonstrated the activation of mitogen-activated protein kinases (MAPKs) Hog1 (
p38
) and Slt2 (
p44/42
) upon VA treatment. Our results also exhibited that VA acts through alteration of mitochondrial, ER architecture and functions. Especially, VA effects were neutralized in cells lacking lipid particles. Altogether, our results deciphered the novel molecular insights and mechanistic links to strengthen our knowledge on diverse cellular effects of VA along with its probable therapeutic targets and detoxification approaches.
Journal Article
Hierarchical design of core–shell structured NiCoAl-LDH composites on rGO/Ni foam with enhanced electrochemical properties for asymmetric supercapacitor
by
Subha, V.
,
Joseph, Deepthi
,
Muralidharan, Vivek Panyam
in
Asymmetry
,
Capacitance
,
Characterization and Evaluation of Materials
2025
In this report, 2D hierarchical NiCo-LDH/rGO was fabricated for the purpose of super capacitors. The NiCoAl-LDH nanoplates were affix on the rGO nanosheets, forming a cross-linked core–shell structure. The morphological, textural and elemental composition of the samples was analysed through SEM, BET, XRD, Raman and XPS analysis. The NiCoAl-LDH/rGO composite exhibited the highest specific capacitance of 1916 ± 0.2 Fg
−1
at 1 Ag
−1
with an excellent cyclic stability of 90.5% over 10,000 charging and discharging cycles at 20 Ag
−1
. The asymmetric supercapacitor assembled with NiCoAl-LDH/rGO and AC electrodes exhibited a high specific capacitance of 182.5 ± 0.1 Fg
−1
at 1 Ag
−1
and superior energy density of 59.3 ± 0.2 Whkg
−1
. The increased conductivity of rGO makes it function faster electrochemically than pure NiCoAl-LDH. SCs may use these materials to hold and transform energy.
Journal Article
Cryo-EM structure of GABA transporter 1 reveals substrate recognition and transport mechanism
2023
The inhibitory neurotransmitter γ-aminobutyric acid (GABA) is cleared from the synaptic cleft by the sodium- and chloride-coupled GABA transporter GAT1. Inhibition of GAT1 prolongs the GABAergic signaling at the synapse and is a strategy to treat certain forms of epilepsy. In this study, we present the cryo-electron microscopy structure of
Rattus norvegicus
GABA transporter 1 (rGAT1) at a resolution of 3.1 Å. The structure elucidation was facilitated by epitope transfer of a fragment-antigen binding (Fab) interaction site from the
Drosophila
dopamine transporter (dDAT) to rGAT1. The structure reveals rGAT1 in a cytosol-facing conformation, with a linear density in the primary binding site that accommodates a molecule of GABA, a displaced ion density proximal to Na site 1 and a bound chloride ion. A unique insertion in TM10 aids the formation of a compact, closed extracellular gate. Besides yielding mechanistic insights into ion and substrate recognition, our study will enable the rational design of specific antiepileptics.
The GABA transporters (GATs) enforce spatiotemporal control of the inhibitory neurotransmitter GABA at neural synapses. Nayak et al. report the structure of substrate-bound GAT1 in an ion-bound cytosol-facing conformation, providing mechanistic insights into GABA selection and reuptake.
Journal Article
Effect of C2-C5 Alcohol Blends with Diesel and Camphor Oil as Additive on the Performance and Emissions in Diesel Engine
2023
The design of internal combustion has developed in many countries, so adopting highly optimized and increased engine performance and reduced emissions become essential. To enhance the property of the base diesel fuel, the alcohol namely ethanol and pentanol with camphor oil as an additive. The diesel engine which is fuelled with varying proportions of alcohol gave reduced amount of (NOx, HC and CO) and increased the brake thermal performance.
Journal Article
Biochemical characterization of a GDP-mannose transporter from Chaetomium thermophilum
2023
Nucleotide Sugar Transporters (NSTs) belong to the SLC35 family (human solute carrier) of membrane transport proteins and are crucial components of the glycosylation machinery. NSTs are localized in the ER and Golgi apparatus membranes, where they accumulate nucleotide sugars from the cytosol for subsequent polysaccharide biosynthesis. Loss of NST function impacts the glycosylation of cell surface molecules. Mutations in NSTs cause several developmental disorders, immune disorders, and increased susceptibility to infection. Atomic resolution structures of three NSTs have provided a blueprint for a detailed molecular interpretation of their biochemical properties. In this work, we have identified, cloned, and expressed 18 members of the SLC35 family from various eukaryotic organisms in Saccharomyces cerevisiae. Out of 18 clones, we determined Vrg4 from Chaetomium thermophilum (CtVrg4) is a GDP-mannose transporter with an enhanced melting point temperature (Tm) of 56.9°C, which increases with the addition of substrates, GMP and GDP-mannose. In addition, we report—for the first time—that the CtVrg4 shows an affinity to bind to phosphatidylinositol lipids.
Journal Article
Structural basis of norepinephrine recognition and transport inhibition in neurotransmitter transporters
by
Penmatsa, Aravind
,
Deepthi, Joseph
,
Mallela, Aditya Kumar
in
Binding sites
,
Biochemistry
,
Catecholamines
2020
Norepinephrine is a biogenic amine neurotransmitter that has widespread effects on cardiovascular tone, alertness and sensation of pain. As a consequence, blockers of norepinephrine uptake have served as vital tools to treat depression and chronic pain. Here, we employ a modified Drosophila melanogaster dopamine transporter as a surrogate for the human norepinephrine transporter and determine the X-ray structures of the transporter in its substrate-free and norepinephrine-bound forms. We also report structures of the transporter in complex with inhibitors of chronic pain including duloxetine, milnacipran and a synthetic opioid, tramadol. When compared to dopamine, we observe that norepinephrine binds in a different pose, in the vicinity of subsite C within the primary binding site. Our experiments reveal that this region is the binding site for chronic pain inhibitors and a determinant for norepinephrine-specific reuptake inhibition, thereby providing a paradigm for the design of specific inhibitors for catecholamine neurotransmitter transporters. Competing Interest Statement The authors have declared no competing interest.
Biochemical characterization of a GDP-mannose transporter from Chaetomium thermophilum
by
Dhanabalan, Kanagavijayan
,
Deepthi, Joseph
,
Subramanian, Ramaswamy
in
Biochemistry
,
Cell surface
,
Chaetomium thermophilum
2023
Nucleotide Sugar Transporters (NSTs) belong to the SLC35 family (human solute carrier) of membrane transport proteins and are crucial components of the glycosylation machinery. NSTs are localized in the ER and Golgi apparatus membranes, where they accumulate nucleotide sugars from the cytosol for subsequent polysaccharide biosynthesis. Loss of NST function impacts the glycosylation of cell surface molecules. Mutations in NSTs cause several developmental disorders, immune disorders, and increased susceptibility to infection. Atomic resolution structures of three NSTs have provided a blueprint for a detailed molecular interpretation of their biochemical properties. In this work, we have identified, cloned, and expressed 18 members of the SLC35 family from various eukaryotic organisms in Saccharomyces cerevisiae. Out of 18 clones, we determined Vrg4 from Chaetomium thermophilum (CtVrg4) is a GDP-mannose transporter with an enhanced melting point temperature (Tm) of 56.9 °C, which increases with the addition of substrates, GMP and GDP-mannose. In addition, we report—for the first time—that the CtVrg4 shows an affinity to bind to phosphatidylinositol lipids.Competing Interest StatementThe authors have declared no competing interest.