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"Li, Junwen"
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Endophytic Fungi: From Symbiosis to Secondary Metabolite Communications or Vice Versa?
2021
Endophytic fungi (EF) are a group of fascinating host-associated fungal communities that colonize the intercellular or intracellular spaces of host tissues, providing beneficial effects to their hosts while gaining advantages. In recent decades, accumulated research on endophytic fungi has revealed their biodiversity, wide-ranging ecological distribution, and multidimensional interactions with host plants and other microbiomes in the symbiotic continuum. In this review, we highlight the role of secondary metabolites (SMs) as effectors in these multidimensional interactions, and the biosynthesis of SMs in symbiosis via complex gene expression regulation mechanisms in the symbiotic continuum and via the mimicry or alteration of phytochemical production in host plants. Alternative biological applications of SMs in modern medicine, agriculture, and industry and their major classes are also discussed. This review recapitulates an introduction to the research background, progress, and prospects of endophytic biology, and discusses problems and substantive challenges that need further study.
Journal Article
Defect-induced plating of lithium metal within porous graphene networks
2014
Lithium metal is known to possess a very high theoretical capacity of 3,842 mAh g
−1
in lithium batteries. However, the use of metallic lithium leads to extensive dendritic growth that poses serious safety hazards. Hence, lithium metal has long been replaced by layered lithium metal oxide and phospho-olivine cathodes that offer safer performance over extended cycling, although significantly compromising on the achievable capacities. Here we report the defect-induced plating of metallic lithium within the interior of a porous graphene network. The network acts as a caged entrapment for lithium metal that prevents dendritic growth, facilitating extended cycling of the electrode. The plating of lithium metal within the interior of the porous graphene structure results in very high specific capacities in excess of 850 mAh g
−1
. Extended testing for over 1,000 charge/discharge cycles indicates excellent reversibility and coulombic efficiencies above 99%.
The use of metallic lithium electrodes in batteries would lead to dendritic growth problems. Here, Mukherjee
et al.
use porous graphene electrodes to entrap lithium metal at defect sites, achieving much improved specific capacities over extended cycling.
Journal Article
Promoting or Inhibiting? The Impact of Urban Land Marketization on Carbon Emissions in China
2025
Urban land marketization is a strategy to alleviate land resource misallocation caused by government intervention, but there has been a debate regarding its effectiveness in reducing carbon emissions. This study examines the impact of market-oriented allocation of land resources on carbon emissions using panel data from 284 Chinese cities from 2007 to 2021. The results indicate four findings: (1) Urban land marketization can effectively reduce both the total carbon emission and carbon emission intensity, especially in the central and western cities, non-provincial capital cities, and resource-dependent cities. (2) Promoting land financing, expanding trade openness, and stimulating entrepreneurship are all significant mechanisms for the carbon emission reduction effect of urban land marketization. (3) As per capita income and environmental regulation increase, the impacts of land marketization on carbon emissions are nonlinear. (4) Surrounding cities’ carbon emissions are not mitigated due to administrative border barriers and regional protectionism. This paper sheds light on the role of land marketization in carbon emission reduction and thus provides practical policy implications for promoting economic transition and low-carbon development.
Journal Article
Intestinal Microbiota Mediates High-Fructose and High-Fat Diets to Induce Chronic Intestinal Inflammation
2021
An unhealthy diet has been linked to increased incidence of chronic diseases. To investigate the relationship between diet and intestinal inflammation, mice in two experimental groups were fed on a high-fat diet or high-fructose diet, respectively. The result showed that the defecation volume of the experimental groups was significantly reduced compared with that of the control group, and the levels of pro-inflammatory cytokines (interleukin (IL)-1β and IL-6) and IgG in serum were increased significantly. In addition, inflammatory cell infiltration was observed in intestinal tissue, indicating that a high-fructose or high-fat diet can lead to constipation and inflammation. Further analysis showed that the microbial composition of the experimental groups changed significantly, including a decrease of the Bacteroidetes/Firmicutes ratio and increased levels of Bacteroides , Akkermansia , Lactobacillus , and Ruminococcus , which might be associated with inflammation. The results of pro-inflammatory metabolites analysis showed that the levels of arachidonic acid, stearic acid, and indoxylsulfuric acid were significantly increased in the experimental groups, which were related significantly to Bacteroides , Enterococcus , and Akkermansia . Meanwhile, the content of 5-hydroxytryptamine (5-HT) was significantly decreased, which might cause constipation by reducing intestinal peristalsis. Moreover, transplantation of fecal bacteria from inflammatory mice caused constipation and inflammation in normal mice, which could be relieved by feeding a normal diet. The results of the present study indicated that changes in intestinal microbiota and microbial metabolites may underlie chronic intestinal inflammation and constipation caused by high-fructose and high-fat diets.
Journal Article
GWAS Analysis and QTL Identification of Fiber Quality Traits and Yield Components in Upland Cotton Using Enriched High-Density SNP Markers
by
Jiang, Xiao
,
Geng, Hongwei
,
Iqbal, Muhammad S.
in
Agricultural production
,
candidate gene
,
Cotton
2018
It is of great importance to identify quantitative trait loci (QTL) controlling fiber quality traits and yield components for future marker-assisted selection (MAS) and candidate gene function identifications. In this study, two kinds of traits in 231 F
recombinant inbred lines (RILs), derived from an intraspecific cross between Xinluzao24, a cultivar with elite fiber quality, and Lumianyan28, a cultivar with wide adaptability and high yield potential, were measured in nine environments. This RIL population was genotyped by 122 SSR and 4729 SNP markers, which were also used to construct the genetic map. The map covered 2477.99 cM of
genome, with an average marker interval of 0.51 cM between adjacent markers. As a result, a total of 134 QTLs for fiber quality traits and 122 QTLs for yield components were detected, with 2.18-24.45 and 1.68-28.27% proportions of the phenotypic variance explained by each QTL, respectively. Among these QTLs, 57 were detected in at least two environments, named stable QTLs. A total of 209 and 139 quantitative trait nucleotides (QTNs) were associated with fiber quality traits and yield components by four multilocus genome-wide association studies methods, respectively. Among these QTNs, 74 were detected by at least two algorithms or in two environments. The candidate genes harbored by 57 stable QTLs were compared with the ones associated with QTN, and 35 common candidate genes were found. Among these common candidate genes, four were possibly \"pleiotropic.\" This study provided important information for MAS and candidate gene functional studies.
Journal Article
Association between oxidative stress, mitochondrial function of peripheral blood mononuclear cells and gastrointestinal cancers
2023
Background
The incidence and mortality rate of gastrointestinal cancers are high worldwide. Increasing studies have illustrated that the occurrence, progression, metastasis and prognosis of cancers are intimately linked to the immune system. Mitochondria, as the main source of cellular energy, play an important role in maintaining the physiological function of immune cells. However, the relationship between mitochondrial function of immune cells and tumorigenesis has not yet been systematically investigated.
Methods
A total of 150 cases, including 60 healthy donors and 90 primary gastrointestinal cancer patients without anti-tumor treatments (30 with gastric cancer, 30 with liver cancer and 30 with colorectal cancer) were involved in our study. The oxidant/antioxidant and cytokine levels in plasma, the ROS level, mitochondrial function and apoptosis ratio of peripheral blood mononuclear cells (PBMCs) were evaluated.
Results
The imbalance between oxidant and antioxidant in plasma was discovered in the primary gastrointestinal cancer patients. The levels of cell reactive oxygen species (ROS) and mitochondrial ROS in PBMCs of primary gastrointestinal cancers were significantly increased compared with that in healthy donors. Meanwhile, the ATP content, the mtDNA copy number and the mitochondrial membrane potential (MMP) in PBMCs of patients with primary gastrointestinal cancers were lower than those in control group. The decreased MMP also occurred in immune cells of gastrointestinal cancers, including T cell, B cell, NK cell and monocyte. Furthermore, the PBMCs apoptosis ratio of primary gastrointestinal cancer patients was significantly higher than that of control group. Importantly, an increase of IL-2 and IL-6 and a decrease of IgG in plasma were found in the patients with primary gastrointestinal cancers. These changes of mitochondrial function in immune cells were consistent among primary gastrointestinal cancers without anti-tumor treatments, such as liver cancer, gastric cancer and colorectal cancer.
Conclusion
Our study demonstrated that the imbalance of oxidation/antioxidation in primary gastrointestinal cancer patients without anti-tumor treatments results in excessive ROS. The oxidative stress was associated to the mitochondrial dysfunction, the apoptosis of immune cells and eventually the abnormal immune function in primary gastrointestinal cancers. The application of immune cell mitochondrial dysfunction into clinical evaluation is anticipated.
Journal Article
The Prediction of Oil and Water Content in Tight Oil Fluid: A Case Study of the Gaotaizi Oil Reservoir in Songliao Basin
2025
The oil content in a produced fluid plays a crucial role in oil production engineering. In this paper, a predictive model for the oil and water proportions in produced fluid was established through nuclear magnetic resonance coupling displacement. This model successfully predicts the oil proportion in the produced fluid from each block within the Gaotaizi oil reservoir of the Songliao Basin and elucidates the reasons for its variation across different blocks. The production of pure oil in a vertical well area was attributed to the reservoir fluid exhibiting high bound water saturation, resulting in oil being the primary movable phase. In the testing and extended areas, variations in oil saturation combined with the pore size distribution governing oil and water occupancy are likely responsible for the differing oil-water ratios observed in the produced fluid. Specifically, a higher oil-to-water ratio (7:3) was produced in the testing area, while the extended area yielded a lower oil-to-water ratio (3:7). Furthermore, the model predicts an oil-to-water ratio of 4:6 for the produced fluid in the Fangxing area. To enhance oil production in the extended area, narrowing the fracture interval is proposed. However, this measure may not prove effective in other blocks.
Journal Article
Does administrative divisions adjustment affect polluting industries dependence? Evidence from township-town merge in China
by
Zheng, Xiaodan
,
Sun, Yihong
,
Li, Junwen
in
COVID-19
,
Developing countries
,
Economic conditions
2025
Land distribution is intricately linked to economic quality and sustainable growth, influenced by administrative division adjustment (ADA), which can be categorized into various forms, with the township–town merge (TTM) reform being the most common. This study evaluates the effect of TTM on local governments’ dependence on polluting industries from a fiscal decentralization angle, using the differences-in-differences model with transaction data from China’s land market. Findings reveal that TTM increases local governments’ dependence on polluting industries, especially in districts/counties with weaker economic conditions before the COVID-19 pandemic. Evidence also highlights a notable boundary effect of TTM, though its impact is minimal in districts/counties at provincial borders due to their potentially lower public investment inclination. TTM also increases the decentralization level of districts/counties, thus explaining the increase in local government’s dependence on polluting industries. The empirical results have confirmed such a mechanism. However, top-down supervision limits the effect of the reform to a certain extent. This conclusion offers fresh policy insights for leveraging land supply mechanisms to advance environmental governance in centralized developing nations through the lens of ADA.
Journal Article
Insight into the Interactions Between GhXI-K and Rab GTPases in Cotton Fiber
2026
Myosin XI-K plays an important role in cell expansion and polarized growth, acting as a motor protein that drives organelle trafficking and cytoplasmic streaming. To elucidate the molecular mechanisms of myosin XI-K’s role in the polarized growth of cotton fiber, we investigated the interactions between GhXI-K and Rab GTPases in cotton (Gossypium hirsutum). Protein docking analyses based on AlphaFold3 predicted that GhXI-K interacted with eight Rab GTPases. A total of 37 interaction residues were identified in GhXI-K, of which 5 crucial contact residues were located in the globular tail domain (GTD) and 2 were located in the motor domain. Key interaction residues in the Rab GTPases were also found to be located in conserved regions: switch-I and switch-II. Yeast two-hybrid and bimolecular fluorescence complementation (BiFC) assays confirmed the predictions and showed that these interactions occur primarily in the GTD and the motor domain. Our findings reveal that GhXI-K interacts with Rab GTPases through both the motor and tail domains, suggesting a synergistic mechanism that facilitates polarized vesicle trafficking in cotton fiber cells.
Journal Article
iTRAQ-Based Quantitative Proteomic Analysis of Cotton Roots and Leaves Reveals Pathways Associated with Salt Stress
2016
Salinity is a major abiotic stress that affects plant growth and development. In this study, we performed a proteomic analysis of cotton roots and leaf tissue following exposure to saline stress. 611 and 1477 proteins were differentially expressed in the roots and leaves, respectively. In the roots, 259 (42%) proteins were up-regulated and 352 (58%) were down-regulated. In the leaves, 748 (51%) proteins were up-regulated and 729 (49%) were down-regulated. On the basis of Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis, we concluded that the phenylalanine metabolism and starch and sucrose metabolism were active for energy homeostasis to cope with salt stress in cotton roots. Moreover, photosynthesis, pyruvate metabolism, glycolysis / gluconeogenesis, carbon fixation in photosynthetic organisms and phenylalanine metabolism were inhabited to reduce energy consumption. Characterization of the signaling pathways will help elucidate the mechanism activated by cotton in response to salt stress.
Journal Article